logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001279_00933

You are here: Home > Sequence: MGYG000001279_00933

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pseudomonas_E fulva
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E fulva
CAZyme ID MGYG000001279_00933
CAZy Family PL5
CAZyme Description Alginate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
367 MGYG000001279_50|CGC1 41133.88 9.7549
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001279 4682858 MAG Italy Europe
Gene Location Start: 5225;  End: 6328  Strand: -

Full Sequence      Download help

MTHYKLILRP  ALLALALFAS  AAQASLVPPQ  GYYEGIEKLK  TGTGDFRCEA  PPTPYTGALQ60
FRSKYEGSDK  ARATLNVASE  HAFRTSTQDI  TALEKGVSKL  VTQYMRDGRP  AQLDCALAWL120
GTWARADALM  STNYNHTGKS  MRKWALGSLS  GSWLRLKFSN  ARPLAAHQAE  AELIEKWFAR180
LAQQTVSDWS  DLPLQKINNH  SYWAAWSVMA  TAVATDRRDL  FDWAVKQYKV  GVNQVDDQGF240
LPNEIKRKQR  ALAYHNYALP  PLALIASFAQ  ANGVDLRAEN  NFALQRLGEG  VLAGARDPRH300
FAERAGEKQD  MKDLKVDTKY  AWLEPWCALY  HCVGDTLARK  QGMQPFNSFR  MGGDMTRVYD360
PGAMRKH367

Enzyme Prediction      help

EC 4.2.2.3

CAZyme Signature Domains help

Created with Snap183655739111012814616518320122023825627529331133034824340PL5
Family Start End Evalue family coverage
PL5 24 340 2.5e-174 0.9936708860759493

CDD Domains      download full data without filtering help

Created with Snap183655739111012814616518320122023825627529331133034825363algL26359AlgLyase60301Alginate_lyase
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00325 algL 0.0 25 363 24 359
polysaccharide lyase.
cd00244 AlgLyase 0.0 26 359 7 339
Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.
pfam05426 Alginate_lyase 3.98e-58 60 301 1 274
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.

CAZyme Hits      help

Created with Snap18365573911101281461651832012202382562752933113303481367AVF54370.1|PL5_11367QPH49981.1|PL5_11367QPH44907.1|PL5_11367CRN05288.1|PL5_11367QDC05859.1|PL5_1
Hit ID E-Value Query Start Query End Hit Start Hit End
AVF54370.1 9.32e-276 1 367 1 367
QPH49981.1 1.32e-275 1 367 1 367
QPH44907.1 1.32e-275 1 367 1 367
CRN05288.1 1.32e-275 1 367 1 367
QDC05859.1 3.80e-275 1 367 1 367

PDB Hits      download full data without filtering help

Created with Snap1836557391110128146165183201220238256275293311330348243594OZV_A243594OZW_A483657FHZ_A483657FHU_A483657FI2_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4OZV_A 3.69e-165 24 359 1 334
CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1]
4OZW_A 1.22e-163 24 359 1 334
CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1]
7FHZ_A 1.52e-45 48 365 2 306
ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a]
7FHU_A 1.81e-45 48 365 2 306
ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a]
7FI2_A 5.31e-44 48 365 2 306
ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a]

Swiss-Prot Hits      download full data without filtering help

Created with Snap18365573911101281461651832012202382562752933113303481366sp|B0KGQ9|ALGL_PSEPG1366sp|A5W8V4|ALGL_PSEP11366sp|B1J479|ALGL_PSEPW1366sp|Q88ND1|ALGL_PSEPK10366sp|Q1I563|ALGL_PSEE4
Hit ID E-Value Query Start Query End Hit Start Hit End Description
B0KGQ9 3.51e-240 1 366 1 366
Alginate lyase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=algL PE=3 SV=1
A5W8V4 3.91e-237 1 366 1 366
Alginate lyase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=algL PE=3 SV=1
B1J479 4.56e-236 1 366 1 366
Alginate lyase OS=Pseudomonas putida (strain W619) OX=390235 GN=algL PE=3 SV=1
Q88ND1 5.29e-236 1 366 5 370
Alginate lyase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=algL PE=3 SV=1
Q1I563 2.52e-233 10 366 10 366
Alginate lyase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=algL PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000228 0.999169 0.000162 0.000154 0.000140 0.000136

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001279_00933.