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CAZyme Information: MGYG000001279_01348
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_E fulva | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E fulva | |||||||||||
| CAZyme ID | MGYG000001279_01348 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | Oxygen-dependent choline dehydrogenase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 10772; End: 12367 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 3 | 528 | 4.3e-168 | 0.9964788732394366 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK02106 | PRK02106 | 0.0 | 1 | 526 | 3 | 532 | choline dehydrogenase; Validated |
| COG2303 | BetA | 3.23e-177 | 1 | 528 | 5 | 536 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| TIGR03970 | Rv0697 | 1.20e-85 | 5 | 526 | 2 | 487 | dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
| pfam00732 | GMC_oxred_N | 3.99e-47 | 73 | 292 | 16 | 216 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| pfam05199 | GMC_oxred_C | 7.85e-47 | 385 | 521 | 1 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QWC20507.1 | 2.27e-142 | 4 | 531 | 6 | 530 |
| CAB3230510.1 | 5.39e-124 | 4 | 527 | 25 | 557 |
| AWP09430.1 | 1.42e-116 | 3 | 525 | 19 | 550 |
| ANI26486.1 | 1.06e-113 | 3 | 525 | 70 | 601 |
| CAG5086058.1 | 8.27e-109 | 4 | 526 | 15 | 564 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6YS2_AAA | 1.62e-88 | 4 | 525 | 8 | 560 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
| 6YS1_AAA | 2.27e-88 | 4 | 525 | 8 | 560 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
| 6ZH7_A | 2.27e-88 | 4 | 525 | 8 | 560 | ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 6YRU_AAA | 2.27e-88 | 4 | 525 | 8 | 560 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 5NCC_A | 3.40e-88 | 4 | 525 | 24 | 576 | Structureof Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q988C9 | 1.67e-129 | 3 | 525 | 6 | 533 | 4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1 |
| A7N2P9 | 4.14e-125 | 3 | 530 | 4 | 535 | Oxygen-dependent choline dehydrogenase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=1224742 GN=betA PE=3 SV=1 |
| Q8D3K2 | 2.80e-123 | 3 | 526 | 4 | 531 | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1 |
| Q6LGH5 | 1.00e-122 | 4 | 526 | 5 | 531 | Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum (strain SS9) OX=298386 GN=betA PE=3 SV=1 |
| Q7MF12 | 1.57e-122 | 3 | 526 | 4 | 531 | Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000056 | 0.000004 | 0.000001 | 0.000000 | 0.000000 | 0.000000 |