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CAZyme Information: MGYG000001279_03310

You are here: Home > Sequence: MGYG000001279_03310

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pseudomonas_E fulva
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E fulva
CAZyme ID MGYG000001279_03310
CAZy Family GH103
CAZyme Description Tn3 family transposase TnXax1
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
436 47831.08 6.6572
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001279 4682858 MAG Italy Europe
Gene Location Start: 599;  End: 1909  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001279_03310.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH103 66 361 1.3e-118 0.9932203389830508

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13406 SLT_2 3.81e-157 66 359 2 292
Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.
TIGR02283 MltB_2 4.48e-147 66 363 2 300
lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
COG2951 MltB 2.91e-133 6 363 1 337
Membrane-bound lytic murein transglycosylase B [Cell wall/membrane/envelope biogenesis].
PRK10760 PRK10760 1.93e-41 12 354 4 346
murein hydrolase B; Provisional
cd13399 Slt35-like 2.92e-21 148 275 1 84
Slt35-like lytic transglycosylase. Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CRN05603.1 0.0 1 436 1 436
QPH49649.1 0.0 1 436 1 436
QDC06100.1 0.0 1 436 1 436
QPH44575.1 0.0 1 436 1 436
AVF54097.1 0.0 1 436 1 436

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5AO8_A 5.17e-182 45 436 30 418
CrystalStructure of SltB3 from Pseudomonas aeruginosa in complex with NAG-NAM-pentapeptide [Pseudomonas aeruginosa]
5ANZ_A 2.09e-181 45 436 30 418
CrystalStructure of SltB3 from Pseudomonas aeruginosa. [Pseudomonas aeruginosa],5AO7_A Crystal Structure of SltB3 from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide [Pseudomonas aeruginosa]
5O8X_A 1.57e-32 81 358 20 296
TheX-ray Structure of Catenated Lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa],5O8X_B The X-ray Structure of Catenated Lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa]
4ANR_A 2.24e-32 81 358 37 313
Crystalstructure of soluble lytic Transglycosylase SltB1 from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
1LTM_A 2.69e-30 117 354 76 307
AcceleratedX-ray Structure Elucidation Of A 36 Kda Muramidase/transglycosylase Using Warp [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P41052 3.11e-29 117 354 117 348
Membrane-bound lytic murein transglycosylase B OS=Escherichia coli (strain K12) OX=83333 GN=mltB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000004 0.000108 0.999929 0.000001 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001279_03310.