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CAZyme Information: MGYG000001293_00468

You are here: Home > Sequence: MGYG000001293_00468

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lacticaseibacillus rhamnosus
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus rhamnosus
CAZyme ID MGYG000001293_00468
CAZy Family GH0
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
738 MGYG000001293_1|CGC9 83824.93 7.1686
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001293 3010111 Isolate not provided not provided
Gene Location Start: 484575;  End: 486791  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001293_00468.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG2207 AraC 8.18e-23 134 255 1 122
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 8.91e-22 169 252 1 84
helix_turn_helix, arabinose operon control protein.
COG3664 XynB 7.28e-20 330 736 3 427
Beta-xylosidase [Carbohydrate transport and metabolism].
pfam12833 HTH_18 3.83e-19 175 254 1 81
Helix-turn-helix domain.
COG4753 YesN 2.18e-15 152 253 371 472
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AZZ22146.1 0.0 1 738 1 738
QFG48065.1 0.0 1 738 1 738
QTN15434.1 0.0 1 738 1 738
AXI93474.1 0.0 1 738 1 738
QOX83078.1 0.0 1 738 1 738

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q6GKK1 6.79e-35 29 733 32 739
Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q99XB1 1.21e-34 29 733 32 739
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q7A882 1.21e-34 29 733 32 739
Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q5HJR8 1.61e-34 9 733 9 739
Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GD21 9.00e-34 29 733 32 739
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000020 0.000025 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001293_00468.