CAZyme Information: MGYG000001299_01388

Basic Information

• Species: Amedibacillus dolichus
• Lineage: Bacteria; Firmicutes; Bacilli; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus; Amedibacillus dolichus
• CAZyme ID: MGYG000001299_01388
• CAZy Family: CBM32
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1670	MGYG000001299_5|CGC1	186184.03	4.5667

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001299	2190453	Isolate	not provided	not provided

• Gene Location: Start: 155869; End: 160881 Strand: -

Full Sequence      

MNKKNLKKVLNAVLATGMVLPTMTSPIHVFAEGTANPVFDEATKNSSNDTAKEQAQSETP
MNTNLALNKPVKASAEFSTMPAKNLTDADEESRWSTEVAPPQWAYIDLGQSYSMNTFSAI
FEKEDVYASDYKIYVSDDVNNFGKPVVERSGNKKVKVVEVLKEPVKGRYVKLEVTGMYGY
QSVSCRDFKVSLTDGELQDPMENVALKTNAKASSIEAESVKASNAFDGNASSRDSRWGSD
VGDGPHWIYTDLGKTLDVKTVKVFWETRKATDYQIDIATENPEKEESWTTVYSNKNKPST
KNERIVLKDVQKARYVRLKVNAFTSEDPDGGDSYNSISIYEMEVYGGEIKEDSSEIGNKI
SVEKVQKGDKKLKVNIPNSEDYEITYNGTDYEQVVDKDLTIYQPIVDTEVKVSFKLVDKK
TQEYSFKEIPVTVPGQYEVTEKDNKAPLVLPELREWKGMQGNYELTSSSRVIYASADLKE
TAEIFAKDYLDMTGKKLTVISGTKEDANKGDIFFALTKDTSKGLMEEGNLITIDDAVTVE
AYTQTGAFWGTRTILQALKQGNNTSIAKGITRDYPLYPVRGFILDVGRKTFTMDYLEQLT
KEMSWYKMNDLQIHLNDNLIPLEDYTNKGKDPMQAYSGFRLESNIKKGGNNGLNKADLTS
TDVFYTKEEFRNYIQESRTYGVNIVPEIDTPAHSLALTKVRPDLRHGTSGRQNDHLNLTS
KYDQSLEFVKSIFAEYMTGTNPVFDEQTTVHVGADEYSADGNAYRKFCNDMLAYVQNSGR
TARIWGSLTSIKGDVDVTSKDVQMNLWNFGWANMDQMYEEGFDLINCNDAHYYIVPAAGY
YYDYLNNDIMYNLAINSVGGVTIPAGDEQMIGGAFAVWNDMTDYLNNGISEYDVYDRIEQ
GLPLFAAKLWGKGVYSQEQAQNVSDQLGDAPNTNFAYEVEKDKDGVILHETFNDVSKAKN
ATKETVDGKEALKLNGSESYVLTNEKTAGLGNDLRVKVKRTSTSTNEQVLFESEYGSIKA
VQKNTGKVGFSRENYDYSFNYELPLDEWVELEFKNTKDRTDLYVNGKLVDSINPKEDKTS
NELADLTGNYKPLHATTMLPITTIGSKTNAFVGYVDDIRVGTDATFASTMELDYACITAN
QLLKENDAFADLLKEAEKVLAKYNPTQEEINTLTQKIQKEISATEYKKADYTRVDEYLAL
INEEYLEIYTEESRKELEIVVAGIRRDLPVSMQSTVDGYATQLARAIANLELKAQVNVNY
IDSSTIKATASSYQKDGSSPDKVLDGDTSTMWHTDWTVTKMPHWITLDMKEPKYINGLTY
VPRQTGSNGNVTKYEIYVRDSEPTGTEVSEATGWKKIKAGTLKNDSTEKVIGFDEVKTRY
VSLKYIEAVGNNGSASEIKLHNARAVADTSGLEAIIKDAEKVQADKYTAASYAVLQEKLN
NAKELLKQTEIIANDAEIAKRELIDAMVRLVLKVDTSALKELVEQSEALLEEDYTSASWA
NFKEALNFAKEVLAKSEVSEAELEAAYLRLLNAQSDLVAIYSKESLASLINQANSYNQAD
YTEASWKKLKDALNNANVVYDNEYATLDEIKSAILTLESAISSLEKAEVPGIDEEPGNGS
NNPTKPGQTQPGDVGTGDSTNTGLYASMLALSSFGAVILAVIKKKKALKD

Enzyme Prediction     

No EC number prediction in MGYG000001299_01388.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH20	570	911	1.8e-59	0.9762611275964391
CBM32	210	342	1.3e-18	0.9274193548387096
CBM32	1267	1396	3e-18	0.9274193548387096
CBM32	76	178	1.8e-17	0.8225806451612904

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd06564	GH20_DspB_LnbB-like	3.90e-126	578	911	1	325	Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
cd02742	GH20_hexosaminidase	6.86e-26	580	911	2	303	Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
pfam00728	Glyco_hydro_20	1.02e-25	577	898	1	335	Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold.
cd06563	GH20_chitobiase-like	8.40e-25	577	898	1	334	The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
pfam02838	Glyco_hydro_20b	1.07e-22	446	573	1	123	Glycosyl hydrolase family 20, domain 2. This domain has a zincin-like fold.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCL58378.1	0.0	7	1655	5	1613
QWT17580.1	0.0	64	1444	40	1450
QPS14026.1	1.12e-276	1	1666	1	1524
QMW75640.1	1.12e-276	1	1666	1	1524
QQY27155.1	1.57e-276	1	1666	1	1524

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6JQF_A	7.32e-117	355	1107	2	721	Crystallizationanalysis of a beta-N-acetylhexosaminidase (Am2136) from Akkermansia muciniphila [Akkermansia muciniphila ATCC BAA-835]
4H04_A	4.98e-26	447	910	34	474	Lacto-N-biosidasefrom Bifidobacterium bifidum [Bifidobacterium bifidum JCM 1254],4H04_B Lacto-N-biosidase from Bifidobacterium bifidum [Bifidobacterium bifidum JCM 1254],4JAW_A Crystal Structure of Lacto-N-Biosidase from Bifidobacterium bifidum complexed with LNB-thiazoline [Bifidobacterium bifidum JCM 1254],4JAW_B Crystal Structure of Lacto-N-Biosidase from Bifidobacterium bifidum complexed with LNB-thiazoline [Bifidobacterium bifidum JCM 1254],5BXP_A LNBase in complex with LNB-LOGNAc [Bifidobacterium bifidum JCM 1254],5BXP_B LNBase in complex with LNB-LOGNAc [Bifidobacterium bifidum JCM 1254],5BXR_A LNBase in complex with LNB-NHAcDNJ [Bifidobacterium bifidum JCM 1254],5BXR_B LNBase in complex with LNB-NHAcDNJ [Bifidobacterium bifidum JCM 1254],5BXS_A LNBase in complex with LNB-NHAcCAS [Bifidobacterium bifidum JCM 1254],5BXS_B LNBase in complex with LNB-NHAcCAS [Bifidobacterium bifidum JCM 1254],5BXT_A LNBase in complex with LNB-NHAcAUS [Bifidobacterium bifidum JCM 1254],5BXT_B LNBase in complex with LNB-NHAcAUS [Bifidobacterium bifidum JCM 1254]
3GH4_A	7.49e-19	438	805	30	392	Crystalstructure of beta-hexosaminidase from Paenibacillus sp. TS12 [Paenibacillus sp.],3GH5_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with GlcNAc [Paenibacillus sp.],3GH7_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with GalNAc [Paenibacillus sp.],3SUR_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NAG-thiazoline. [Paenibacillus sp. TS12],3SUS_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with Gal-NAG-thiazoline [Paenibacillus sp. TS12],3SUT_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with PUGNAc [Paenibacillus sp. TS12],3SUU_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with Gal-PUGNAc [Paenibacillus sp. TS12],3SUV_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NHAc-DNJ [Paenibacillus sp. TS12],3SUW_A Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with NHAc-CAS [Paenibacillus sp. TS12]
2J7M_A	1.65e-15	1260	1401	5	148	Characterizationof a Family 32 CBM [Clostridium perfringens]
2J1A_A	1.69e-15	1260	1401	6	149	Structureof CBM32 from Clostridium perfringens beta-N- acetylhexosaminidase GH84C in complex with galactose [Clostridium perfringens ATCC 13124],2J1E_A High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc [Clostridium perfringens ATCC 13124]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
B2UPR7	4.48e-122	351	1107	20	743	Beta-hexosaminidase Amuc_2136 OS=Akkermansia muciniphila (strain ATCC BAA-835 / DSM 22959 / JCM 33894 / BCRC 81048 / CCUG 64013 / CIP 107961 / Muc) OX=349741 GN=Amuc_2136 PE=1 SV=1
Q9HGI3	4.38e-15	535	884	140	498	Beta-hexosaminidase OS=Emericella nidulans OX=162425 GN=nagA PE=1 SV=1
Q8XL08	3.10e-13	1257	1415	620	784	O-GlcNAcase NagJ OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=nagJ PE=1 SV=1
Q0TR53	7.00e-13	1257	1401	620	766	O-GlcNAcase NagJ OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103 GN=nagJ PE=1 SV=1
P96155	1.10e-12	430	756	118	435	Beta-hexosaminidase OS=Vibrio furnissii OX=29494 GN=exoI PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000306	0.998907	0.000196	0.000204	0.000176	0.000154

TMHMM  Annotations     

start	end
9	31
1643	1662