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CAZyme Information: MGYG000001306_00392

You are here: Home > Sequence: MGYG000001306_00392

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola coprocola
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola coprocola
CAZyme ID MGYG000001306_00392
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
495 54006.51 6.3003
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001306 4295617 Isolate not provided not provided
Gene Location Start: 146518;  End: 148005  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001306_00392.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 81 265 7.1e-78 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 4.85e-11 20 265 22 273
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 5.31e-09 92 265 13 186
Amb_all domain.
pfam00544 Pec_lyase_C 3.60e-04 116 244 55 190
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDO69223.1 6.79e-250 8 492 18 508
QUT93111.1 4.54e-248 22 492 37 508
ALJ61309.1 1.50e-247 22 492 41 512
QUT77823.1 1.67e-244 28 492 51 512
QUT75603.1 3.82e-240 21 492 8 482

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B8NQQ7 1.20e-46 26 492 18 411
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
A1DPF0 3.29e-45 26 492 19 412
Probable pectate lyase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyC PE=3 SV=1
B0XMA2 4.57e-45 26 492 19 412
Probable pectate lyase C OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyC PE=3 SV=1
Q2UB83 8.62e-45 26 492 18 411
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1
Q4WL88 1.22e-44 26 492 19 412
Probable pectate lyase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000247 0.999057 0.000172 0.000168 0.000154 0.000149

TMHMM  Annotations      download full data without filtering help

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