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CAZyme Information: MGYG000001306_00840

You are here: Home > Sequence: MGYG000001306_00840

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola coprocola
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola coprocola
CAZyme ID MGYG000001306_00840
CAZy Family GH105
CAZyme Description Unsaturated rhamnogalacturonyl hydrolase YteR
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
416 MGYG000001306_18|CGC1 47375.08 7.0619
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001306 4295617 Isolate not provided not provided
Gene Location Start: 2925;  End: 4175  Strand: -

Full Sequence      Download help

MKTLFFSVCL  FLASVSATAQ  QRYSQEMAQS  QGKQWTHGKS  WDYVNGLVAK  SLLNLCEQYQ60
YADWTGNYYQ  WAKEYADNAI  NPDGTFKNFK  KGNIDNINSG  KVLFALYKRE  KELDKQNGTD120
NASRYKKAAD  FLHDYLVNDY  SRIQSGDAKG  CFFHKDIYPD  QMWLDGLYMG  AAFYAEWQAN180
FEPDNEQAWT  DIAHQFKTIA  RHTYDKDKQL  YYHAWSANPE  DSNSFWANKT  EPYKGCSKEF240
WGRGMGWDFA  ALVDVLEVMP  KTHADYKELV  TITNTVAKGL  KRWQDKTSGV  WYQLLQYDNS300
YVGECGIANY  LESSASSMFT  YAYLKGVRLG  ILPKSYEKVA  EKAYQGLLKT  FVTSNNDGTI360
NLNQSCRSAG  LGPAKDPSRD  GSASYYLCGK  DVTIVSNEGK  AIGPFIMASL  EYELKK416

Enzyme Prediction      help

No EC number prediction in MGYG000001306_00840.

CAZyme Signature Domains help

Created with Snap2041628310412414516618720822824927029131233235337439533413GH105
Family Start End Evalue family coverage
GH105 33 413 2.4e-103 0.9819277108433735

CDD Domains      download full data without filtering help

Created with Snap2041628310412414516618720822824927029131233235337439523413Glyco_hydro_8814414YesR
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07470 Glyco_hydro_88 1.81e-80 23 413 1 340
Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.
COG4225 YesR 5.61e-76 14 414 2 355
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism].

CAZyme Hits      help

Created with Snap204162831041241451661872082282492702913123323533743951416ADY37243.1|GH10541416QRQ48843.1|GH10541416QUT45332.1|GH10541413QCK16975.1|GH10541415BBE19946.1|GH105
Hit ID E-Value Query Start Query End Hit Start Hit End
ADY37243.1 1.28e-275 1 416 1 416
QRQ48843.1 2.45e-136 41 416 55 449
QUT45332.1 4.91e-136 41 416 55 449
QCK16975.1 1.32e-86 41 413 23 359
BBE19946.1 1.49e-85 41 415 58 396

PDB Hits      download full data without filtering help

Created with Snap20416283104124145166187208228249270291312332353374395214134WU0_A414131NC5_A414132GH4_A1223604Q88_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4WU0_A 4.15e-80 21 413 2 359
StructuralAnalysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824],4WU0_B Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824]
1NC5_A 2.08e-53 41 413 39 365
Structureof Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis]
2GH4_A 8.77e-53 41 413 29 355
ChainA, Putative glycosyl hydrolase yteR [Bacillus subtilis]
4Q88_A 2.06e-11 122 360 108 318
ChainA, Uncharacterized protein [Phocaeicola vulgatus ATCC 8482],4Q88_B Chain B, Uncharacterized protein [Phocaeicola vulgatus ATCC 8482]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2041628310412414516618720822824927029131233235337439541413sp|O34559|URHG2_BACSU169411sp|P0A3U6|PIC1_AGRFC169411sp|P0A3U7|PIC1_RHIRD163389sp|P9WF04|UH105_ALTSL
Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34559 1.14e-52 41 413 39 365
Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1
P0A3U6 1.69e-22 169 411 1 227
Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1
P0A3U7 1.69e-22 169 411 1 227
24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1
P9WF04 5.48e-07 163 389 201 399
Unsaturated 3S-rhamnoglycuronyl hydrolase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_28 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000217 0.999212 0.000144 0.000141 0.000128 0.000126

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001306_00840.