CAZyme Information: MGYG000001306_03851

Basic Information

• Species: Phocaeicola coprocola
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola coprocola
• CAZyme ID: MGYG000001306_03851
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
990		109946.67	7.0071

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001306	4295617	Isolate	not provided	not provided

• Gene Location: Start: 46499; End: 49471 Strand: -

Full Sequence      

MNRRVTGLLVCISLWIGAYASSVRILEQADDSVACRRWVDGQLARMTLKQKIGQLFIHTV
APITIQKNKDNIERAVKEYGVGGLLFSKGELKKQVQLTNQAQQWADIPLMITFDGEWGLG
MRLEDTPEFPRNRVLGCVQNDTLIYQYGREVARQLREIGVHVNFAPVADVDNNPNNPVIN
VRSFGSDPKVVADKVVAYSRGLEDGGVMAVCKHFPGHGDTDTDSHHVLPVLDFDRTRLDS
VELYPFKKAVEAGVGGVMIGHLHVSELDEKPASISSEVITSLLRKELHFSGLVFTDALEM
KGISKNADDLCVQALMAGNYMLLVPRNLKKSLESVMRAVKSGKLTEDVITEKCRKVLTYK
YALGLSHKQQVAAEGIENRICSAKSDSLMIALEKAAVTVLKDSVDVLPLDLSLSENILLS
LSSSLSEAYPFYKELKESVSLSWLHGNADSLQQIQERVAPAHQVIVAVHQTKDLSAFLPF
LEKVAADKPLVVVCFASQKVLQEMSSVLKKASAVILAHTDKAEIQRYVADVMTGQDLVDG
RLSVDMNGLWKSGTGLTIDPDKPRSYSPEELGMDSKILLAIDTIAEEGIRQQAYPGCHVL
ITKGGYPVYNKCFGTLTYDGKEEVKEHTIYDLASLSKAAGTLLAIMKLYDEGKFGLTDKV
SIYLPELRKTNKQNITIQDLLFHESGLPSYLPFYEEAIDLKTCKGGLFRKKPDAGHKLQI
ASNLYACTDFSFKKEWMSSTPSEIYSLQLADSMYLNKEYQRVVMQQIINAPLKGHSYRYS
CLNFMLLKEVVERISKVPMDVYLDSVFFKPMGLKHTAYNPLKRFPKEEIAPSAKIDFLRG
GPLQGYVHDEAAAFVGGVSGNAGLFSTTHDLAVIFQMLLDRGICGDRRYLSRATCGLFMG
MKAKSSRRGLGFDKPDIESDDNSPCAPEAPASVFGHTGFTGTCVWVDPDNELVFVFLSNR
TYPVVFGHDNLMKLDIRSRIQQAMYQSIMY

Enzyme Prediction     

No EC number prediction in MGYG000001306_03851.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	101	323	7.3e-60	0.9814814814814815

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	2.90e-78	47	358	1	315	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	3.98e-70	46	410	1	351	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	3.69e-58	567	965	29	401	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	9.68e-45	581	970	1	318	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	1.07e-39	567	963	27	366	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADY37542.1	0.0	8	988	5	985
QRO23705.1	0.0	1	988	1	986
QUT85469.1	0.0	31	989	34	991
QQY39794.1	0.0	10	989	11	991
ABR37873.1	0.0	10	989	11	991

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	1.03e-60	46	542	11	527	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	4.64e-58	31	408	25	446	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.84e-57	34	408	2	420	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	2.37e-57	31	408	29	450	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	4.50e-57	43	356	21	342	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	2.54e-57	31	408	25	446	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
B5F0K5	6.18e-43	567	965	29	400	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella agona (strain SL483) OX=454166 GN=yfeW PE=3 SV=1
Q8Z4S7	8.37e-43	567	965	29	400	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella typhi OX=90370 GN=yfeW PE=3 SV=1
B4TD53	8.37e-43	567	965	29	400	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=yfeW PE=3 SV=1
P48823	9.73e-43	72	409	55	425	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000249	0.999131	0.000159	0.000144	0.000135	0.000130

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001306_03851.