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CAZyme Information: MGYG000001314_01931

You are here: Home > Sequence: MGYG000001314_01931

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacteroides_F pectinophilus
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Bacteroides_F; Bacteroides_F pectinophilus
CAZyme ID MGYG000001314_01931
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
517 MGYG000001314_8|CGC12 57161.06 5.1781
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001314 3025526 Isolate not provided not provided
Gene Location Start: 1409392;  End: 1410945  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001314_01931.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 104 469 1.3e-82 0.9353846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.99e-97 5 511 5 542
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.78e-30 107 463 2 307
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 6.39e-30 81 477 36 388
polygalacturonase/glycoside hydrolase family protein
PLN03010 PLN03010 3.26e-28 83 395 48 320
polygalacturonase
PLN03003 PLN03003 2.16e-24 82 395 24 301
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACR72585.1 3.84e-310 1 515 1 515
ABX43097.1 3.24e-248 1 517 1 517
BCJ96409.1 4.11e-239 1 515 1 514
QNM03367.1 1.50e-227 1 517 1 517
VCV21973.1 9.96e-226 1 517 1 518

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 7.32e-42 82 457 28 429
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.73e-38 50 380 17 355
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 1.95e-29 98 395 26 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 1.11e-27 47 405 116 510
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1CZF_A 3.18e-11 107 421 29 318
Endo-PolygalacturonaseIi From Aspergillus Niger [Aspergillus niger],1CZF_B Endo-Polygalacturonase Ii From Aspergillus Niger [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 5.93e-53 62 466 47 431
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644 1.05e-46 230 446 30 247
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
P18192 1.33e-29 98 395 52 340
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 1.59e-28 98 395 52 340
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P15922 1.07e-26 50 457 114 578
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000057 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001314_01931.