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CAZyme Information: MGYG000001314_02652

You are here: Home > Sequence: MGYG000001314_02652

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacteroides_F pectinophilus
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Bacteroides_F; Bacteroides_F pectinophilus
CAZyme ID MGYG000001314_02652
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
661 70971.02 6.8759
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001314 3025526 Isolate not provided not provided
Gene Location Start: 2139553;  End: 2141538  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001314_02652.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 230 400 4.3e-41 0.8366336633663366

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.17e-62 99 517 2 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 7.05e-32 237 402 17 190
Amb_all domain.
pfam00544 Pec_lyase_C 1.64e-18 237 398 35 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
PRK11633 PRK11633 5.11e-05 561 634 70 143
cell division protein DedD; Provisional
NF033909 opacity_OapA 8.75e-05 566 653 254 340
opacity-associated protein OapA. This family consists of full-length homologs to OapA, opacity-associated protein A as described in Haemophilus influenzae. OapA shares a C-terminal homology domain, called the OapA domain, with the Escherichia coli protein YtfB, which is now known to bind peptidoglycan through its OapA domain and to act as a cell division protein.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ94010.1 1.09e-234 1 653 8 627
ACR72247.1 6.91e-215 4 572 7 587
AIQ44647.1 3.70e-211 34 653 31 635
ACX62589.1 5.77e-211 39 571 37 573
AIQ50255.1 1.18e-209 39 653 36 645

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.24e-20 228 400 72 248
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 8.98e-19 233 398 129 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1AIR_A 1.81e-14 188 413 31 272
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 4.33e-14 188 413 31 272
ChainA, Pectate lyase C [Dickeya chrysanthemi]
3ZSC_A 9.22e-14 239 383 71 221
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q65DC2 2.17e-22 179 407 59 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
Q8GCB2 2.17e-22 179 407 59 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
B1B6T1 2.17e-22 179 407 59 281
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
P0C1C2 1.36e-18 155 413 38 293
Pectate lyase 3 OS=Pectobacterium carotovorum OX=554 GN=pel3 PE=1 SV=1
Q4WIT0 4.12e-18 213 417 69 277
Probable pectate lyase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000338 0.998969 0.000181 0.000188 0.000152 0.000140

TMHMM  Annotations      download full data without filtering help

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