Species | Citrobacter portucalensis_A | |||||||||||
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Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter portucalensis_A | |||||||||||
CAZyme ID | MGYG000001317_04307 | |||||||||||
CAZy Family | GT4 | |||||||||||
CAZyme Description | Glutamate/aspartate import solute-binding protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 2201460; End: 2202368 Strand: + |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK10797 | PRK10797 | 0.0 | 1 | 302 | 1 | 302 | glutamate and aspartate transporter subunit; Provisional |
cd13688 | PBP2_GltI_DEBP | 1.76e-119 | 33 | 270 | 1 | 238 | Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
cd01000 | PBP2_Cys_DEBP_like | 7.56e-93 | 33 | 270 | 1 | 228 | Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold. This family comprises of the periplasmic-binding protein component of ABC transporters specific for cysteine and carboxylic amino acids, as well as their closely related proteins. The cysteine and aspartate-glutamate binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
cd13689 | PBP2_BsGlnH | 1.18e-65 | 33 | 271 | 1 | 229 | Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
smart00062 | PBPb | 2.23e-58 | 41 | 270 | 1 | 219 | Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
BBV05439.1 | 5.63e-170 | 1 | 302 | 1 | 297 |
QIF58808.1 | 5.63e-170 | 1 | 302 | 1 | 297 |
AWS50894.1 | 5.63e-170 | 1 | 302 | 1 | 297 |
QZY63525.1 | 5.63e-170 | 1 | 302 | 1 | 297 |
BBV13529.1 | 5.63e-170 | 1 | 302 | 1 | 297 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
2VHA_A | 9.31e-200 | 24 | 302 | 1 | 279 | DEBP[Shigella flexneri],2VHA_B DEBP [Shigella flexneri] |
2IA4_A | 1.92e-192 | 24 | 302 | 1 | 279 | Crystalstructure of Novel amino acid binding protein from Shigella flexneri [Shigella flexneri 2a str. 301],2IA4_B Crystal structure of Novel amino acid binding protein from Shigella flexneri [Shigella flexneri 2a str. 301] |
5EYF_A | 4.67e-29 | 33 | 277 | 8 | 243 | CrystalStructure of Solute-binding Protein from Enterococcus faecium with Bound Glutamate [Enterococcus faecium DO],5EYF_B Crystal Structure of Solute-binding Protein from Enterococcus faecium with Bound Glutamate [Enterococcus faecium DO] |
4ZV1_A | 9.66e-29 | 40 | 270 | 10 | 231 | Anancestral arginine-binding protein bound to arginine [synthetic construct],4ZV2_A An ancestral arginine-binding protein bound to glutamine [synthetic construct] |
2V25_A | 4.65e-20 | 1 | 265 | 1 | 257 | Structureof the Campylobacter jejuni antigen Peb1A, an aspartate and glutamate receptor with bound aspartate [Campylobacter jejuni],2V25_B Structure of the Campylobacter jejuni antigen Peb1A, an aspartate and glutamate receptor with bound aspartate [Campylobacter jejuni] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q9ZF60 | 4.87e-212 | 1 | 302 | 1 | 302 | Glutamate/aspartate import solute-binding protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=gltI PE=3 SV=3 |
P37902 | 2.59e-207 | 1 | 302 | 1 | 302 | Glutamate/aspartate import solute-binding protein OS=Escherichia coli (strain K12) OX=83333 GN=gltI PE=1 SV=2 |
Q9I402 | 1.06e-115 | 5 | 300 | 2 | 298 | L-glutamate/L-aspartate-binding protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA1342 PE=1 SV=1 |
O34563 | 1.85e-25 | 32 | 271 | 38 | 268 | ABC transporter glutamine-binding protein GlnH OS=Bacillus subtilis (strain 168) OX=224308 GN=glnH PE=2 SV=1 |
P27676 | 1.08e-24 | 31 | 252 | 50 | 262 | Glutamine-binding protein OS=Geobacillus stearothermophilus OX=1422 GN=glnH PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000672 | 0.900186 | 0.098094 | 0.000414 | 0.000326 | 0.000267 |
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