Species | Clostridium tertium | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium tertium | |||||||||||
CAZyme ID | MGYG000001328_00534 | |||||||||||
CAZy Family | GH39 | |||||||||||
CAZyme Description | HTH-type transcriptional activator RhaR | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 225850; End: 227916 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH39 | 480 | 641 | 6.9e-19 | 0.35730858468677495 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
COG2207 | AraC | 1.27e-25 | 173 | 275 | 21 | 123 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
smart00342 | HTH_ARAC | 1.74e-23 | 188 | 271 | 1 | 84 | helix_turn_helix, arabinose operon control protein. |
pfam12833 | HTH_18 | 1.29e-19 | 194 | 273 | 1 | 81 | Helix-turn-helix domain. |
COG4753 | YesN | 2.53e-14 | 180 | 275 | 380 | 475 | Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]. |
PRK10371 | PRK10371 | 4.69e-11 | 180 | 272 | 199 | 291 | transcriptional regulator MelR. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
ATD56640.1 | 0.0 | 1 | 688 | 1 | 689 |
QBJ75981.1 | 0.0 | 1 | 688 | 1 | 689 |
SLK21057.1 | 0.0 | 1 | 688 | 1 | 689 |
ATD55683.1 | 0.0 | 1 | 688 | 1 | 689 |
AYE35030.1 | 0.0 | 1 | 688 | 1 | 689 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
6SWI_A | 2.05e-13 | 176 | 278 | 9 | 112 | TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus] |
3LSG_A | 2.86e-12 | 186 | 271 | 17 | 102 | Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum] |
3MKL_A | 3.16e-07 | 176 | 274 | 11 | 108 | Crystalstructure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 [Escherichia coli K-12],3MKL_B Crystal structure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 [Escherichia coli K-12] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q6GD21 | 1.92e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1 |
Q8NYT6 | 1.92e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1 |
Q99XB1 | 5.80e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1 |
Q7A882 | 5.80e-15 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1 |
Q6GKK1 | 1.75e-14 | 30 | 658 | 21 | 713 | Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000040 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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