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CAZyme Information: MGYG000001332_00860

You are here: Home > Sequence: MGYG000001332_00860

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium methylpentosum
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium methylpentosum
CAZyme ID MGYG000001332_00860
CAZy Family cohesin
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1238 129757.77 4.2625
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001332 3406391 Isolate not provided not provided
Gene Location Start: 1018339;  End: 1022055  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001332_00860.

CAZyme Signature Domains help

Family Start End Evalue family coverage
cohesin 39 158 7.1e-17 0.9253731343283582

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd08548 Type_I_cohesin_like 1.45e-16 39 171 1 135
Type I cohesin domain, interaction partner of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I cohesins; their interactions with dockerin mediate assembly of a range of dockerin-borne enzymes to the complex.
COG5492 YjdB 2.55e-14 223 407 143 321
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
COG5492 YjdB 3.67e-14 204 494 27 326
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
COG5492 YjdB 7.76e-14 785 992 128 321
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].
COG5492 YjdB 2.07e-11 367 649 33 317
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ANQ52856.2 1.53e-49 256 1011 712 1551
QWG05121.1 3.12e-48 256 1017 712 1555
QWG05123.1 2.40e-41 256 1003 703 1538
BCT44110.1 9.35e-39 261 824 318 826
ATU19782.1 6.70e-35 249 651 955 1399

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q086E4 1.02e-29 257 926 40 653
Ice-binding protein 1 OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=Sfri_1018 PE=1 SV=1
P33747 2.07e-13 764 913 39 189
Uncharacterized protein CA_P0160 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=CA_P0160 PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000284 0.999027 0.000172 0.000184 0.000161 0.000140

TMHMM  Annotations      download full data without filtering help

start end
11 33
1210 1232