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CAZyme Information: MGYG000001332_01002

You are here: Home > Sequence: MGYG000001332_01002

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium methylpentosum
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium methylpentosum
CAZyme ID MGYG000001332_01002
CAZy Family CBM67
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1589 174383.72 4.1665
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001332 3406391 Isolate not provided not provided
Gene Location Start: 1190483;  End: 1195252  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001332_01002.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH78 426 892 1.8e-73 0.9722222222222222
CBM67 208 390 1.1e-36 0.9943181818181818
CBM32 1110 1251 2.9e-25 0.967741935483871

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17389 Bac_rhamnosid6H 1.65e-23 519 830 6 340
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam00754 F5_F8_type_C 1.14e-21 1108 1238 1 120
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam08531 Bac_rhamnosid_N 3.96e-12 235 399 3 166
Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
cd00057 FA58C 8.11e-11 1102 1237 7 135
Substituted updates: Jan 31, 2002
smart00231 FA58C 1.05e-06 1100 1253 5 137
Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AYC36171.1 3.81e-192 208 1252 42 1119
AXE90460.1 7.45e-192 208 1252 42 1119
QTU58279.1 2.03e-191 208 1252 42 1119
AZP23721.1 2.71e-191 200 1252 8 1093
AVV47733.1 1.06e-190 198 1252 7 1094

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3CIH_A 1.03e-11 491 866 276 672
Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482]
4XHC_A 2.28e-08 517 829 207 541
ChainA, Alpha-L-rhamnosidase [Klebsiella oxytoca],4XHC_B Chain B, Alpha-L-rhamnosidase [Klebsiella oxytoca]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
E8MGH9 9.97e-07 1404 1535 1667 1803
Beta-L-arabinobiosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.008109 0.984594 0.006341 0.000340 0.000286 0.000296

TMHMM  Annotations      download full data without filtering help

start end
5 27
1565 1584