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CAZyme Information: MGYG000001332_01065

You are here: Home > Sequence: MGYG000001332_01065

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium methylpentosum
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium methylpentosum
CAZyme ID MGYG000001332_01065
CAZy Family CBM67
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1462 MGYG000001332_11|CGC5 159164.77 4.008
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001332 3406391 Isolate not provided not provided
Gene Location Start: 1278633;  End: 1283021  Strand: +

Full Sequence      Download help

MKTSAKAKII  SVVLSIAMIA  SVATQAFAAV  PSGTAASTAI  VSLKTNNHVD  PLNVDDTTPT60
FSWQMQSNVI  GAMQSAYQIV  VTDPNGSTVW  DSGKQYDSAS  AAVEYAGDAL  SPTTTYSWTV120
TVWDTAGNSY  TSEPASFETG  FMDTTIDAWD  GAQWIGTQER  NLDATSLYIF  NMGYKLRLVP180
ETTKASFIFG  ADDFRLTNKY  LSELLTGTEN  YIRVELDITD  MTEEGGAKLN  IYRPGYSQTN240
ADPDVPYLTI  SAESGSNIDE  ILTYANRYDT  HSFDFTVNAS  SISLKIDGTQ  LQLSGGSRPT300
TSFKVKDGET  GNNYNTYPDL  NQIGFQADPG  QVAVFSDLYV  ANFDLWASDK  VGARLFDSET360
GATYSIFDGI  KGVSHTGNEL  FINGGLTGVF  GYADPSYGSV  PMLRTEINAS  KEIADARLFV420
TAHGIYEMYI  NGERVGEDYF  NPGVSEYEKN  LRYTAYDVTS  MLNQGVNAVG  ALLGPGWWSD480
SMSYTPDNYN  YYGDQQALLA  KIVVKYTDGT  SDTFVTNPDT  WTTSNESPIR  YSSFFQGERY540
DATMEAAVEG  WNTAGFDASD  WVNASVIETR  EKFANAALTG  DENDPGRVAE  VVDSTYVGES600
KEGSGSYIYD  MGTNMLGIPQ  ITIPEGYASE  GQEVIIRYAE  VFYPELDEYV  EQGVDGLLMV660
ENYRAALSTD  FYTCKDGAQT  IQPTFTYHGY  RYLEITGLDK  PLPAECVKSL  SLSSIEEMTG720
SYNSSNELVN  QLFKNVQRSQ  YSNFLSLPTD  CPQRNERMGW  LGDAQVFART  ASYNADVSNI780
YQSFLDIIRD  DQTEEGHISV  YAPSYGGSGF  WSGTSWQSAI  AIIPYQMYMQ  TGNTDIIREN840
IDAMYSYLGY  LAAAPLSEAA  PHLTSRAGFL  ADWLSIDSTD  SNLINNAVYV  YTMDIFVQMA900
NVIGDERAAE  LAERYEAAKA  EWNALYIDPE  TGRTTDHTQA  SYATPLMYGV  INDEYVEKAA960
ANLVDTVENP  QNPEVKPYTI  TTGFSGTPFI  VPSLTNYGYV  DDAYKMLEQT  EYASWLYPVT1020
QGATSIWERW  NSYTLEGGFN  GNNSMNSFNH  YSLGAIAEWM  YGYQLGITNA  EGVAAYKEFV1080
LQPTVGGSFT  FANGSFDSKY  GTIESGWTAA  DGAMDSYSAT  VPANTTATLY  LPVSEEATAN1140
FADVDGITYL  GRTTHNNQSV  AAFKLVAGEY  SFNLVDGKLV  ASVADGYVSG  PDIGKDILRK1200
TIAYAQEQKA  DPSFENVIPM  VQESFNAALE  NAIAVEANPA  ADKDMVYNAW  TTLMNEIHKL1260
GFVKGDKTNL  EKLILAGDGI  LVDIDNYIED  GKQEFTDALA  AAKVVFNDPN  ALEGEVTEAS1320
DRLLDAMVNL  RLKADKSLLG  KTIEVANSID  TAVYTLESVN  VFNTAKAEAE  AIYNDDAYDR1380
DQEAINAATN  KLQNAIDGLV  PIDSSTDLDA  NTSTPDVPVQ  GDATATTGTS  TPKTGETAPA1440
AIAVAMLALA  GAAAVLGKKN  RK1462

Enzyme Prediction      help

No EC number prediction in MGYG000001332_01065.

CAZyme Signature Domains help

Created with Snap731462192923654385115846577318048779501023109611691242131513886011131GH78397568CBM67
Family Start End Evalue family coverage
GH78 601 1131 2.8e-147 0.9940476190476191
CBM67 397 568 2.7e-31 0.8863636363636364

CDD Domains      download full data without filtering help

Created with Snap731462192923654385115846577318048779501023109611691242131513887171063Bac_rhamnosid6H411568Bac_rhamnosid_N601703Bac_rhamnosid10711140Bac_rhamnosid_C13541400FIVAR
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17389 Bac_rhamnosid6H 4.25e-102 717 1063 1 339
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531 Bac_rhamnosid_N 1.49e-49 411 568 1 154
Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592 Bac_rhamnosid 4.13e-20 601 703 2 93
Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam17390 Bac_rhamnosid_C 3.04e-18 1071 1140 4 72
Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam07554 FIVAR 0.006 1354 1400 22 69
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits      help

Created with Snap73146219292365438511584657731804877950102310961169124213151388371193QGH33563.1|GH78361179AHF25035.1|GH78401175QGH37059.1|GH78271175AOZ98905.1|GH78401175AIF65800.1|GH78
Hit ID E-Value Query Start Query End Hit Start Hit End
QGH33563.1 7.65e-306 37 1193 39 1210
AHF25035.1 4.01e-280 36 1179 19 1231
QGH37059.1 2.10e-275 40 1175 32 1183
AOZ98905.1 3.42e-269 27 1175 11 1180
AIF65800.1 2.63e-262 40 1175 25 1162

PDB Hits      download full data without filtering help

Created with Snap731462192923654385115846577318048779501023109611691242131513885111833W5M_A40411326GSZ_A40111726I60_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3W5M_A 1.65e-134 51 1183 17 1036
CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6GSZ_A 4.46e-96 404 1132 135 847
Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
6I60_A 1.41e-91 401 1172 177 939
Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits      download full data without filtering help

Created with Snap73146219292365438511584657731804877950102310961169124213151388511132sp|Q82PP4|RHA78_STRAW3881132sp|T2KNB2|PLH20_FORAG3931175sp|P9WF03|RHA78_ALTSL4041158sp|T2KPL4|PLH28_FORAG6901032sp|T2KM26|PLH36_FORAG
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q82PP4 9.26e-134 51 1132 17 995
Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
T2KNB2 8.12e-114 388 1132 162 879
Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
P9WF03 1.35e-109 393 1175 168 911
Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KPL4 2.55e-62 404 1158 188 925
Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
T2KM26 1.24e-07 690 1032 700 1048
Bifunctional sulfatase/alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22250 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000320 0.998876 0.000177 0.000235 0.000189 0.000166

TMHMM  Annotations      download full data without filtering help

start end
7 29
1438 1457