dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001334_01057

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Basic Information help

Species

Ligilactobacillus ruminis

Lineage

Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Ligilactobacillus; Ligilactobacillus ruminis

CAZyme ID

MGYG000001334_01057

CAZy Family

GH25

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
823	MGYG000001334_1\|CGC8	93884.36	9.9632

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001334	2103640	Isolate	not provided	not provided

Gene Location

Start: 1067525; End: 1069996 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001334_01057.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH25	97	279	4.5e-32	0.9830508474576272

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd06522	GH25_AtlA-like	1.35e-58	95	293	2	192	AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
NF033930	pneumo_PspA	2.65e-28	522	755	439	640	pneumococcal surface protein A. The pneumococcal surface protein proteins, found in Streptococcus pneumoniae, are repetitive, with patterns of localized high sequence identity across pairs of proteins given different specific names that recombination may be presumed. This protein, PspA, has an N-terminal region that lacks a cross-wall-targeting YSIRK type extended signal peptide, in contrast to the closely related choline-binding protein CbpA which has a similar C-terminus but a YSIRK-containing region at the N-terminus.
NF033930	pneumo_PspA	7.13e-27	322	583	443	640	pneumococcal surface protein A. The pneumococcal surface protein proteins, found in Streptococcus pneumoniae, are repetitive, with patterns of localized high sequence identity across pairs of proteins given different specific names that recombination may be presumed. This protein, PspA, has an N-terminal region that lacks a cross-wall-targeting YSIRK type extended signal peptide, in contrast to the closely related choline-binding protein CbpA which has a similar C-terminus but a YSIRK-containing region at the N-terminus.
COG5263	COG5263	2.77e-25	551	772	87	309	Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism].
pfam01183	Glyco_hydro_25	3.98e-25	97	279	1	178	Glycosyl hydrolases family 25.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AEN77492.1	5.15e-267	29	578	1	551
AWZ39196.1	3.17e-76	74	321	199	444
AWZ40161.1	3.17e-76	74	321	199	444
QCQ03274.1	2.10e-75	80	312	205	433
AUJ29432.1	9.51e-75	72	333	202	465

PDB Hits help

has no PDB hit.

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000606	0.606725	0.391147	0.000858	0.000399	0.000247

TMHMM Annotations download full data without filtering help

start	end
13	35