logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001356_00554

You are here: Home > Sequence: MGYG000001356_00554

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lawsonibacter sp000177015
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; Lawsonibacter; Lawsonibacter sp000177015
CAZyme ID MGYG000001356_00554
CAZy Family GH136
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
841 MGYG000001356_1|CGC4 92091.95 4.3552
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001356 3197155 Isolate not provided not provided
Gene Location Start: 572035;  End: 574560  Strand: +

Full Sequence      Download help

MEDNVSTALR  MKRGKEVMKK  RWLTAFALLI  GITATIGALS  WLPIQASAAG  SEGTTYYFST60
LNGDNNNSGT  SQEQAWASLN  MLEEKNITLQ  AGDKVYLERG  SIFNNEFLHL  REVKGTQDAP120
IVIDAYGDSG  KALPVINTNG  QGIWYQDYGT  ALDNAQHVYR  GYVSSSILLY  DCEYIEISNI180
AMTNRNLDID  VEYNARSMMN  RTGVAVVAQN  GGTLDHIYLK  GLDIQDVEGN  VQDKHMNNGG240
IYFTVFKPEN  EGSTGIARYN  DVRIEDCYLK  SVNRWGIALA  YTAYHAKFPD  STISNEAAQT300
YGMTNVFIRN  NYLEDVGGDA  ITTMYCYRPV  VEYNVANGAA  SQINAKDYKG  EGTTGDKPFG360
CVAASVWPWK  CKDAVFQYNE  VYNTHNDGGW  NGDGQAWDAD  WGDGTVYQYN  YSHDNEGGCF420
MICLQHAYNS  VFRYNISQND  STGIIVAATN  PNADIYNNTF  YIKEGVPFVY  TNSGSYGALD480
VKNNIIYYAG  STPKDENWQT  GTCGYANNIF  VNYNNVPAGT  NNIQLSAAEG  ASLMVDPGKG540
GTGNAQGNAL  NTLSGYQLKD  GSPAINAGTM  VETPAFLFEM  ESQGVHADQD  FFGNPIGLKP600
DIGAFESDPA  NEGDELLLVS  SVYQITEDET  GNSVNSIPKN  TTVEQFLAKI  QYTSGATAQV660
TRKGVPMEPD  QAIEGGDILT  LSLAGKQKQY  TLYLEPEYYE  RTGWTATAGS  AQTGEGAERA720
LDGKLDTLWH  SNWDGCTQDE  AWICIDMKQK  QTVSALQYVP  RQSQVNGLIL  EYKIEFSKDG780
TDWSTIPSVT  GTWAKDNTTK  TVTFAPVEAQ  YVRLTGVKTA  SDGALNFVSA  AEIYLGRVAM840
Q841

Enzyme Prediction      help

EC 3.2.1.140

CAZyme Signature Domains help

Created with Snap428412616821025229433637842046250454658863067271475679853606GH136706834CBM32
Family Start End Evalue family coverage
GH136 53 606 4.7e-149 0.9959266802443992
CBM32 706 834 2.7e-26 0.9354838709677419

CDD Domains      download full data without filtering help

Created with Snap4284126168210252294336378420462504546588630672714756798705833F5_F8_type_C699814FA58C707814FA58C737832Glyco_hydro_106304459Beta_helix
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 8.50e-21 705 833 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 1.56e-15 699 814 7 126
Substituted updates: Jan 31, 2002
smart00231 FA58C 6.47e-07 707 814 15 121
Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
pfam17132 Glyco_hydro_106 3.50e-05 737 832 204 300
alpha-L-rhamnosidase.
pfam13229 Beta_helix 0.002 304 459 9 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Created with Snap428412616821025229433637842046250454658863067271475679853607QCT93619.1|GH13653607ARV05068.1|GH13624723ADO52688.1|GH13624723BBA56588.1|GH13624728ADP35567.1|GH136
Hit ID E-Value Query Start Query End Hit Start Hit End
QCT93619.1 5.53e-155 53 607 34 580
ARV05068.1 1.04e-151 53 607 34 579
ADO52688.1 6.61e-142 24 723 10 731
BBA56588.1 1.55e-141 24 723 10 732
ADP35567.1 8.15e-141 24 728 44 769

PDB Hits      download full data without filtering help

Created with Snap4284126168210252294336378420462504546588630672714756798526077V6M_A474866KQT_A516127V6I_A456075GQC_A474866KQS_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
7V6M_A 6.25e-163 52 607 7 577
ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
6KQT_A 5.87e-136 47 486 238 665
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
7V6I_A 6.03e-136 51 612 11 614
ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
5GQC_A 4.71e-134 45 607 9 597
Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
6KQS_A 4.15e-132 47 486 238 665
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits      download full data without filtering help

Created with Snap4284126168210252294336378420462504546588630672714756798701834sp|I1S2N3|GAOA_GIBZE701834sp|P0CS93|GAOA_GIBZA613833sp|P0DTR4|ADAC_FLAPL706833sp|P29767|NANH_CLOSE711837sp|Q2MGH6|GH101_STRPN
Hit ID E-Value Query Start Query End Hit Start Hit End Description
I1S2N3 3.34e-15 701 834 52 187
Galactose oxidase OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=GAOA PE=3 SV=1
P0CS93 4.40e-15 701 834 52 187
Galactose oxidase OS=Gibberella zeae OX=5518 GN=GAOA PE=1 SV=1
P0DTR4 4.75e-12 613 833 438 641
A type blood N-acetyl-alpha-D-galactosamine deacetylase OS=Flavonifractor plautii OX=292800 PE=1 SV=1
P29767 4.86e-11 706 833 58 181
Sialidase OS=Clostridium septicum OX=1504 PE=3 SV=1
Q2MGH6 6.54e-10 711 837 1502 1626
Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=SP_0368 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.011406 0.987482 0.000334 0.000388 0.000199 0.000176

TMHMM  Annotations      download full data without filtering help

start end
21 43