CAZyme Information: MGYG000001364_03456

Basic Information

• Species: Phocaeicola plebeius
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola plebeius
• CAZyme ID: MGYG000001364_03456
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
989	MGYG000001364_17|CGC1	110041.71	6.9556

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001364	4421324	Isolate	not provided	Asia

• Gene Location: Start: 42708; End: 45677 Strand: -

Full Sequence      

MKRRILWCILCACLASTSLFAQEPVLLSRVHDTEACRKWVDGQMEKMTLKQKVGQLFIYT
LQPVTNQYSKNVLRKMVDDYGVGGLLFTGGELRKQVQMTNYAQAHASVPLMVTFDGEWGL
GMRLKDTPSFPYNRVLGCIQNDSLLYEYGKEVARQCRLIGVQINFAPVADVDNNPNNPVI
NFRSFGGDPKRVAEKVAAYVKGLEDNGVMAVCKHFPGHGDTEIDSHNALPELNFDRARLD
SIELYPFKKAVEAGIGGVMVGHLHAPSLGEGPASISQEVIMHTLIDELRFHGLVVTDALE
MKGIAGHDDVCARALIAGNDVVLSPRNLKKEIDGVMSALKKGRLSEADIDRKCRKVLSFK
YALGLSSWEKVEEEGLAEKLVTPELLSLQQELSKAAVTVLKDSSSLVPLDLSVSGTVLLS
VSPSLSEAYPFYHQLKQTFPVGWLHANVDSLDVVETRLRPTQRVLVALHSDKVEPYAALL
EKLAKDKPLALICFGDMKMLEKIPEVVRHASTVVLAHTDEKSVQRYVADLFLGNAYADGR
LSIPLAGVFKAGDGLTIDPEAPRQYSPEDLGMDASILSQIDSIAEEGIQLKAYPGCHVMI
LREGLPVYNKCFGNYTYAGKESVKENSLYDLASLTKVTATLLAVMKLYDEGKFGLTDCVS
DYLPILKKTDKSRITVRDLLFHESGLPAYWPFYEEALDMKSCKGGLFRKKADKNHTLKLA
ENVYACNDFRYNPEWVSCTSSVEYPLQVADSLFLRSDFSKNILEQIAKVPVKGKSYRYSC
LNFMLLKELVEKVAGVPMDVYLDSVFYTPMGLRHTAFLPLRKFTKKQIVPSVENDFLRGS
KLQGFVQDEAAAFMGGVSGNAGLFSTAQDVAKIAQMWLDKGICGDRRYLSRATCELFTTL
KSRDSRRGLGFDKPDTEHTDNSPCTPEAPASVFGHTGFTGTCVWVDPDNELIFVFLSNRT
YPSVYEPNNLVRYNIRTRMQQVMYQAILH

Enzyme Prediction     

No EC number prediction in MGYG000001364_03456.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	103	323	2.5e-56	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	2.25e-75	48	358	1	315	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	5.97e-71	47	420	1	361	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	9.26e-61	564	967	27	403	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	4.35e-44	580	967	1	316	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	6.65e-43	540	962	1	366	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRO23705.1	0.0	1	987	1	986
ADY37542.1	0.0	1	987	1	985
ALA72189.1	0.0	1	988	1	991
AII66347.1	0.0	1	988	1	991
QJR54154.1	0.0	1	988	1	991

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	3.15e-59	47	545	11	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	3.32e-56	28	423	21	460	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
4GYJ_A	1.67e-55	28	423	25	464	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3LK6_A	3.31e-55	35	423	2	434	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
3SQL_A	2.08e-52	44	349	12	335	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	1.82e-55	28	423	21	460	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P77619	3.70e-45	564	967	27	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	1.69e-44	564	967	27	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
B5F0K5	1.53e-42	566	967	29	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella agona (strain SL483) OX=454166 GN=yfeW PE=3 SV=1
B4TD53	1.53e-42	566	967	29	403	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000697	0.998398	0.000344	0.000188	0.000170	0.000180

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001364_03456.