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CAZyme Information: MGYG000001365_02016

You are here: Home > Sequence: MGYG000001365_02016

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phascolarctobacterium_A succinatutens
Lineage Bacteria; Firmicutes_C; Negativicutes; Acidaminococcales; Acidaminococcaceae; Phascolarctobacterium_A; Phascolarctobacterium_A succinatutens
CAZyme ID MGYG000001365_02016
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2776 MGYG000001365_96|CGC1 314441.79 4.5956
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001365 2121560 Isolate not provided not provided
Gene Location Start: 53636;  End: 61966  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001365_02016.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 1.93e-75 1467 1995 1 540
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
pfam18824 LPD11 1.91e-33 911 977 1 69
Large polyvalent protein-associated domain 11. This is an alpha-helical domain with conserved hydrophobic residues. It is found in polyvalent proteins of conjugative elements.
COG4646 COG4646 3.12e-24 2125 2325 427 635
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
smart00487 DEXDc 3.46e-11 1939 2042 7 110
DEAD-like helicases superfamily.
cd18011 DEXDc_RapA 5.67e-10 1941 2195 1 179
DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASV45029.1 0.0 1168 2680 1544 3139
QIW86704.1 0.0 1168 2680 1612 3207
QIW86628.1 0.0 1168 2680 1612 3207
AEY69616.1 0.0 1168 2713 1685 3305
AXF51455.1 0.0 1168 2690 1778 3389

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 5.76e-40 1191 2512 51 1567
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000059 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001365_02016.