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CAZyme Information: MGYG000001366_00804

You are here: Home > Sequence: MGYG000001366_00804

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Succinatimonas hippei
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; Succinatimonas; Succinatimonas hippei
CAZyme ID MGYG000001366_00804
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
434 47701.26 9.4374
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001366 2304998 Isolate not provided Asia
Gene Location Start: 33378;  End: 34682  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001366_00804.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 16 373 5.8e-122 0.9830508474576272

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00025 lpxB 9.15e-166 16 395 5 379
lipid-A-disaccharide synthase; Reviewed
COG0763 LpxB 5.12e-134 16 393 5 381
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
pfam02684 LpxB 1.89e-110 16 387 2 374
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
TIGR00215 lpxB 8.12e-109 16 390 9 385
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK01021 lpxB 3.50e-45 13 350 227 563
lipid-A-disaccharide synthase; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QBY05541.1 6.23e-114 12 391 6 379
ANQ17765.1 1.72e-110 17 393 9 379
ANQ22332.1 1.72e-110 17 393 9 379
AEX22878.1 2.44e-110 17 393 9 379
AXT71496.1 2.44e-110 17 393 9 379

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8S_A 5.61e-88 16 390 10 380
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]
5W8N_A 7.92e-88 16 390 10 380
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q87MF0 1.01e-107 17 393 9 379
Lipid-A-disaccharide synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=lpxB PE=3 SV=1
A0KZ10 1.23e-107 14 391 8 379
Lipid-A-disaccharide synthase OS=Shewanella sp. (strain ANA-3) OX=94122 GN=lpxB PE=3 SV=1
Q0HGW8 6.96e-107 14 391 8 379
Lipid-A-disaccharide synthase OS=Shewanella sp. (strain MR-4) OX=60480 GN=lpxB PE=3 SV=1
Q0HT75 9.84e-107 14 391 8 379
Lipid-A-disaccharide synthase OS=Shewanella sp. (strain MR-7) OX=60481 GN=lpxB PE=3 SV=1
A7MY02 1.62e-106 17 393 9 379
Lipid-A-disaccharide synthase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=1224742 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000054 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001366_00804.