CAZyme Information: MGYG000001370_03090

Basic Information

• Species: Bacteroides fluxus
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides fluxus
• CAZyme ID: MGYG000001370_03090
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1015	MGYG000001370_88|CGC7	113033.37	9.664

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001370	4330086	Isolate	not provided	not provided

• Gene Location: Start: 347259; End: 350306 Strand: -

Full Sequence      

MKKIFLFAFIFLVFCGQLATDAQHVSTRPVPVPAADPSLVCSLQNDTRCRQWVDSVLKQL
TLKERIGQLFIYTIAPQQNKANRELLRKVVEDYKVGGLLFSGGLMQNQVALTNEAQQMAD
VPLMITFDGEWGLSMRLRGTPGFPKNMVLGCIRDDSLIYEYGREMARQCRELGVQVNFAP
VADVNINPRNPVINTRSFGENPRDVADKVIAYSKGLEDGGVLSVSKHFPGHGDTDVDSHK
ALPTLPFSRARLDSVELYPFKKAIQAGLGGIMVGHLEVPVFEPRKGLPSSLSRNVVHDLL
TRELKFQGLIFTDALAMKGVSGNSSICLQALKAGNDLLLVPRRIKEEVEAILDAVKRGDL
KETDVERKCRKVLTYKYALGLARKPYVRLSGLGTRINTPKTRDLIRRLNLAAITVLDNQT
KLLPLDPSVKEVAVLNIGDSREIQPFIKELSQFTRPVEIQLGKNLTTAQCRQLQDSLARY
KRILVCVTEHRLTPYQTFFTQFAPGVPVAYLCFIPGKQVLQIHRGISAGEAVILAHSSND
DVQKQVAGILYGRASADGRLSASIGNLFAAGTGLSLGPQTMPHFVPEEYGINSRLLSRID
EIAEEGIREGAYPGCQIVILKDGKEMYNKAFGTYTGKGTAAKREAKSVPVTSASVYDLAS
LTKTTATLLAVMKLYDKGRLNLTDRVSDYLPFLQDTDKKDITVRELLLHESGLPSTLLFY
QDAIDKDSYSGTLFKGRPDNVHPVRIGSRTWANPKFRFRKELASKVRTEEFTLQVSDSLW
LNRSFKDEYLQKIADAPLRDKRYRYSCVGFIVLQQLVEARAGMPMDEFLAREFYTPMGLK
RTGFLPLRFLKKEEIVPSSKDAFLRKTTLQGFVHDESAAFQGGVSGNAGLFSTAGEVARI
YQMLLNGGELDGTRYLSRETCKLFTTVVSKISRRGLGFDKPDSRHPQKSPCAASAPASVY
GHTGFTGTCAWVDPDNGLVYVFLSNRIYPDAWNTRLMRLDIRTRIQEVIYEALKK

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	115	340	5.7e-56	0.9861111111111112

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	3.99e-77	60	435	1	360	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	8.57e-77	61	374	1	315	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	4.93e-59	567	1014	6	432	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	8.85e-46	599	991	1	313	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	3.84e-42	567	990	8	367	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADV42274.1	0.0	1	1014	1	997
QMI79443.1	0.0	1	1013	1	1009
QUT62072.1	0.0	1	1013	1	1009
QQA30538.1	0.0	1	1013	1	1009
QUT65080.1	0.0	1	1013	1	1009

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	7.57e-65	58	564	9	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	9.91e-58	54	427	36	449	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	2.88e-57	54	427	10	423	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	5.03e-57	54	427	40	453	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	1.70e-52	67	401	31	371	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	5.43e-57	54	427	36	449	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	1.75e-43	86	474	55	465	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	1.67e-42	586	1015	30	433	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	1.39e-41	586	1015	30	433	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
O05213	3.61e-39	592	986	45	404	N-acetylmuramyl-L-alanine amidase OS=Bacillus subtilis (strain 168) OX=224308 GN=amiE PE=1 SV=3

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000439	0.998378	0.000620	0.000192	0.000173	0.000163

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001370_03090.