CAZyme Information: MGYG000001372_00157

Basic Information

• Species: Paraprevotella xylaniphila
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Paraprevotella; Paraprevotella xylaniphila
• CAZyme ID: MGYG000001372_00157
• CAZy Family: PL11
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1500		164707.48	4.656

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001372	3789432	Isolate	not provided	not provided

• Gene Location: Start: 30928; End: 35430 Strand: +

Full Sequence      

MKKRLLLSMLAACCLTAQAQRMMEELNRGLVAVQTDKGVFTSWRIHGTEYYDTQYNLYRD
GKLVNPEPLDVSNFTDLEGTASSTYTVKAVVRGEEQDACEPVEVWQNQYLRIPMGKVYSR
RGTDITQDYVLNDATAADLDGDGEMEIIVKRMYNETGLFFSSNDSAFTFFEAYKLNGKKL
WSIDIGPNMISAGDVETNITAFDWDGDGKAEILMRAMDGTIVYTSDGKAQTIGDPTKNYR
DTILHNANFTYSMAGDEFLVYMNGETAELYWETKEFPLKRLEKEETNLEAAWGDGYGHRA
NKFFFGAPFLNGRTPSIFMARGIYTRHKMIAYDVNPQTHELTERWQWICNDGSSPWFGQG
YHNFGIADVDLDGRDEIVYGSMVIDDTGKGLSTTGYGHGDAQHCSDLDPYSKGLEIFACN
ENRAGANYRDATTSKVYYWYQHSQDCGRCLAGKFTEEHLGGQCSAGHSGIISCVTGKPVT
NGTNGAIGSSFRLYWDGDLCSESLDGTTITYYDWMTFPLEGTHSNNGSKGTPSLQADIFG
DWREEVINPSTDDQSLIIYTTTIPTPWRNYTLLHDMQYRQAICWQMCGYNQPPHVSYFMG
ETERYTTTPPPLMTNGRTEVKDAITTAQNGQHVLLAAPEGGEVTVAEGASPYILTVNAFS
HTEGHDNNDNITTSYSTYTLKGGTFGGDMRLVKQGEGILNLSGEQTYSGPTDLWSGIVNF
TGKLPNSRVWMNRFAELNAKADFGKDIKMEYASVLRVGGTGEAATIHADSVTMRYGAVME
FDLYSENTQADRIVLAKGLLLETLNRSDGPEFQAPIFRFTPHYQNGKSVMAAGRYLIAEV
KKIDGNVDDILLQGLETQKCHLEYENGQIFLVIKETRDAAQVYWDGTHTLNEWNLNENEN
FNNAGEADIFVSGDDVVFDDAATNASVRIDEKLYPKTVTFENDTKTYSLSGNGGISGETG
LAKKGNGTLIISNTNTYSGKTVLEGGTTTVSALADSIVREGALGGYTREIGNFEIRNGAT
LRNTTSIKNGVPITIGEGGAVFQTDGELTLNKPLYGNGNTLTKTGPSNLILFAADNLKKT
YLKEGTLQAKGEGVLFGDTLIFTGNATYQDFDDGNTYSLNLNNIKIEEGVTGTMRCDSRC
ENRIKLFGKGTLKIYVPWIRSNFTGDWSAFEGTVEPSNPDNWFTLDNSYGMPKGTLNIPE
RTTVNNTAKPYSIGKVTGRGTLSGDNNTWRIGSLNEDFSFPGKIEGEGTQLVKTGTGKMT
LTGIHTFTGSCTVQEGTLLINNASASEGMLGAGSVTVKANSTFCGRGKLDNSTFTVEKDG
LLYPGISETATTGSIDFSENSVTIDKGGILSMNIASKTRCTNLTGIKILNLYGILRLHVR
ESLALEAGDEFRLWEASRTRIRPTTAFELDSPGEGLEWDTTDIEDGIVRVKLSTSVNDIH
ADEEVACEAFTIGGAHVGSFTCTRKDIRCTLKQSGAAPGTYMVKIIQGNSTATEKISIDY

Enzyme Prediction     

No EC number prediction in MGYG000001372_00157.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL11	22	605	1.8e-169	0.9828473413379074

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd10318	RGL11	0.0	23	597	1	564	Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
pfam18370	RGI_lyase	6.79e-42	21	105	1	86	Rhamnogalacturonan I lyases beta-sheet domain. This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases, which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) and Chitinase C (EC:3.2.1.14).
PRK15319	PRK15319	9.90e-12	952	1388	681	1077	fibronectin-binding autotransporter adhesin ShdA.
PRK15319	PRK15319	2.91e-11	911	1303	712	1059	fibronectin-binding autotransporter adhesin ShdA.
PRK15319	PRK15319	2.91e-11	684	1356	998	1561	fibronectin-binding autotransporter adhesin ShdA.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AGB29439.1	0.0	1	1484	1	1508
QIM09959.1	1.05e-312	16	1485	7	1528
BCS86257.1	4.76e-252	22	873	1	866
QZN78711.1	2.60e-140	23	601	1	566
ABN51485.1	4.32e-140	16	600	252	805

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2Z8R_A	1.34e-134	19	601	1	570	Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
4CAG_A	4.15e-132	15	601	3	577	Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2ZUY_A	1.47e-124	20	600	5	590	Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31526	1.79e-133	19	601	38	607	Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527	6.36e-124	20	600	5	590	Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.002837	0.689530	0.305171	0.001061	0.000770	0.000607

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001372_00157.