logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001372_02672

You are here: Home > Sequence: MGYG000001372_02672

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paraprevotella xylaniphila
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Paraprevotella; Paraprevotella xylaniphila
CAZyme ID MGYG000001372_02672
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
486 MGYG000001372_81|CGC1 54663.01 5.873
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001372 3789432 Isolate not provided not provided
Gene Location Start: 40027;  End: 41487  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001372_02672.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 229 469 7e-40 0.676923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.42e-10 229 366 236 371
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02218 PLN02218 6.51e-08 239 471 200 416
polygalacturonase ADPG
PLN02793 PLN02793 3.18e-04 238 405 184 337
Probable polygalacturonase
pfam00295 Glyco_hydro_28 0.001 211 470 88 305
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 0.006 241 405 148 298
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT92200.1 3.84e-169 3 486 2 461
ALJ62050.1 2.20e-168 3 486 2 461
QJR77942.1 3.97e-167 18 486 19 464
AII64640.1 1.02e-166 18 486 16 461
QUT34117.1 1.60e-166 3 486 2 464

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 2.09e-09 186 478 157 433
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.004162 0.993941 0.001107 0.000256 0.000257 0.000250

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001372_02672.