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CAZyme Information: MGYG000001375_00636

You are here: Home > Sequence: MGYG000001375_00636

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_F champanellensis
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_F; Ruminococcus_F champanellensis
CAZyme ID MGYG000001375_00636
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
915 98882.08 5.1415
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001375 2513436 Isolate not provided not provided
Gene Location Start: 709593;  End: 712340  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001375_00636.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 262 446 1.7e-55 0.9076923076923077
CBM13 557 701 3.8e-26 0.6968085106382979
CBM13 712 852 1.2e-18 0.6914893617021277

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.23e-44 185 517 33 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 9.08e-20 258 446 10 186
Amb_all domain.
pfam00544 Pec_lyase_C 1.06e-18 234 443 2 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam14200 RicinB_lectin_2 3.97e-18 642 740 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 6.15e-18 596 685 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 1 915 1 915
CDM68184.1 1.58e-120 36 615 29 584
VEB20252.1 2.01e-96 33 530 28 488
QII50179.1 2.01e-96 33 530 28 488
AJO19478.1 1.07e-95 33 530 28 488

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 2.68e-11 198 423 14 212
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
5B2H_A 1.34e-06 626 753 163 281
Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 2.96e-59 182 521 32 339
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 3.79e-58 182 521 32 339
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 7.32e-51 198 521 12 306
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 9.03e-47 182 521 7 308
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q00645 9.58e-12 191 423 39 234
Pectate lyase plyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001469 0.997603 0.000289 0.000235 0.000189 0.000190

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001375_00636.