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CAZyme Information: MGYG000001380_00264

You are here: Home > Sequence: MGYG000001380_00264

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_B gnavus
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Ruminococcus_B; Ruminococcus_B gnavus
CAZyme ID MGYG000001380_00264
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
519 57942.94 4.8211
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001380 3437962 Isolate not provided not provided
Gene Location Start: 260233;  End: 261792  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001380_00264.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 104 464 1.1e-74 0.9292307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.28e-96 74 501 76 517
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02793 PLN02793 2.56e-30 81 397 53 342
Probable polygalacturonase
PLN02218 PLN02218 2.19e-28 80 428 67 378
polygalacturonase ADPG
pfam00295 Glyco_hydro_28 2.62e-27 186 428 48 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 4.20e-27 78 466 34 384
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRT31278.1 0.0 1 519 1 519
QEI32796.1 0.0 1 519 1 522
QHB22130.1 0.0 1 519 1 522
QOV20147.1 1.09e-239 1 515 1 515
QRP36832.1 7.12e-225 1 512 1 515

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 8.66e-30 78 378 25 345
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.12e-21 49 327 16 304
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 6.39e-17 50 432 119 536
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 4.49e-15 97 394 26 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
4MR0_A 5.01e-08 40 294 80 322
Crystalstructure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6],4MR0_B Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 1.12e-44 213 475 15 278
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 1.42e-38 59 464 35 430
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q8RY29 1.25e-24 80 440 67 390
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
P48978 1.05e-22 80 429 98 409
Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1
P35336 6.52e-22 80 429 89 399
Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000071 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001380_00264.