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CAZyme Information: MGYG000001384_01803
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ralstonia pickettii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii | |||||||||||
| CAZyme ID | MGYG000001384_01803 | |||||||||||
| CAZy Family | PL5 | |||||||||||
| CAZyme Description | Polysaccharide lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1897364; End: 1898326 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL5 | 27 | 291 | 2.1e-86 | 0.9085173501577287 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00325 | algL | 5.86e-126 | 1 | 317 | 1 | 359 | polysaccharide lyase. |
| cd00244 | AlgLyase | 1.53e-45 | 71 | 310 | 91 | 336 | Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. |
| pfam05426 | Alginate_lyase | 2.84e-33 | 31 | 256 | 2 | 274 | Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QQK36786.1 | 2.63e-240 | 1 | 320 | 1 | 320 |
| AOJ91036.1 | 1.69e-183 | 7 | 317 | 7 | 317 |
| AKM44681.1 | 2.67e-180 | 1 | 317 | 1 | 317 |
| ALX16800.1 | 2.67e-180 | 7 | 317 | 7 | 317 |
| QUN46375.1 | 1.54e-179 | 1 | 317 | 1 | 317 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7FI2_A | 4.94e-42 | 28 | 310 | 1 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHZ_A | 8.22e-42 | 28 | 310 | 1 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHU_A | 9.72e-42 | 28 | 310 | 1 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 4OZW_A | 4.15e-32 | 61 | 314 | 76 | 335 | CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1] |
| 4OZV_A | 8.05e-32 | 61 | 314 | 76 | 335 | CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B2FHL8 | 3.85e-41 | 25 | 310 | 19 | 318 | Polysaccharide lyase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt1473 PE=1 SV=1 |
| Q1I563 | 2.84e-34 | 55 | 313 | 95 | 359 | Alginate lyase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=algL PE=3 SV=1 |
| Q4KHY5 | 3.09e-33 | 43 | 313 | 87 | 363 | Alginate lyase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=algL PE=3 SV=1 |
| B0KGQ9 | 2.90e-32 | 55 | 313 | 95 | 359 | Alginate lyase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=algL PE=3 SV=1 |
| B7UUU9 | 4.04e-32 | 61 | 316 | 103 | 364 | Alginate lyase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=algL PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.009540 | 0.967495 | 0.019840 | 0.002448 | 0.000353 | 0.000277 |