logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001384_01834

You are here: Home > Sequence: MGYG000001384_01834

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ralstonia pickettii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii
CAZyme ID MGYG000001384_01834
CAZy Family AA3
CAZyme Description Alcohol dehydrogenase [acceptor]
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
544 MGYG000001384_1|CGC17 59372.03 7.7538
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001384 5243975 Isolate not provided not provided
Gene Location Start: 1928536;  End: 1930170  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001384_01834.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 3 531 2.5e-172 0.9947183098591549

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK02106 PRK02106 0.0 1 529 3 531
choline dehydrogenase; Validated
COG2303 BetA 0.0 3 529 7 533
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
TIGR03970 Rv0697 1.45e-89 5 529 2 486
dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
pfam05199 GMC_oxred_C 3.58e-50 387 525 1 143
GMC oxidoreductase. This domain found associated with pfam00732.
pfam00732 GMC_oxred_N 7.34e-44 72 295 15 217
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CAD2222301.1 4.48e-200 3 529 9 546
QWC20507.1 9.12e-151 2 530 4 525
CAB3230510.1 8.23e-136 4 529 25 555
AWP09430.1 2.01e-129 3 530 19 551
ANI26486.1 1.84e-128 3 530 70 602

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2JBV_A 3.41e-90 4 533 14 530
Crystalstructure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis]
3NNE_A 3.41e-90 4 533 14 530
Crystalstructure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis]
3LJP_A 1.33e-89 4 533 14 530
ChainA, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis]
5OC1_A 5.01e-87 4 531 2 563
Crystalstructure of aryl-alcohol oxidase from Pleurotus eryngii in complex with p-anisic acid [Pleurotus eryngii]
3FIM_B 2.80e-86 4 531 3 564
Crystalstructure of aryl-alcohol-oxidase from Pleurotus eryingii [Pleurotus eryngii]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q1QXE1 7.28e-142 4 530 7 536
Oxygen-dependent choline dehydrogenase 1 OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=betA1 PE=3 SV=1
Q6UPE0 1.39e-137 2 530 44 577
Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
Q9L4K0 1.25e-136 4 530 7 534
Oxygen-dependent choline dehydrogenase OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=betA PE=3 SV=1
Q8BJ64 2.27e-135 2 530 41 574
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
A5WA97 9.89e-135 4 530 5 534
Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000042 0.000006 0.000001 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001384_01834.