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CAZyme Information: MGYG000001384_02166

You are here: Home > Sequence: MGYG000001384_02166

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ralstonia pickettii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii
CAZyme ID MGYG000001384_02166
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
671 MGYG000001384_2|CGC1 69482.71 6.4724
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001384 5243975 Isolate not provided not provided
Gene Location Start: 114040;  End: 116055  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001384_02166.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 142 503 1.7e-57 0.7261538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.45e-121 64 669 26 541
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 2.51e-15 342 590 85 312
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 1.19e-08 342 600 192 426
polygalacturonase ADPG
PLN03003 PLN03003 1.34e-08 341 508 137 293
Probable polygalacturonase At3g15720
PLN02793 PLN02793 9.30e-08 342 504 177 333
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QQK37052.1 0.0 1 671 1 671
AWY55388.1 0.0 22 671 22 672
AJW99801.1 0.0 22 671 22 672
AYQ88422.1 0.0 22 671 22 672
AEA60722.1 0.0 22 671 22 672

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 4.99e-54 131 503 39 349
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 2.83e-38 131 502 56 356
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
7E56_A 4.99e-06 362 545 120 295
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]
6KVE_A 5.14e-06 362 545 128 303
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]
6KVH_A 5.14e-06 362 545 128 303
ChainA, endo-polygalacturonase [Evansstolkia leycettana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 8.30e-25 339 503 196 358
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644 3.70e-18 345 491 25 170
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
P58598 2.11e-07 380 505 265 390
Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000) OX=267608 GN=pglA PE=3 SV=1
Q9LW07 2.45e-07 341 420 137 218
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
P20041 3.35e-06 389 505 282 388
Polygalacturonase OS=Ralstonia solanacearum OX=305 GN=pglA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as TAT

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000010 0.000012 0.000046 0.523473 0.476443 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001384_02166.