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CAZyme Information: MGYG000001384_04712
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ralstonia pickettii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii | |||||||||||
| CAZyme ID | MGYG000001384_04712 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 170855; End: 171328 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13400 | LT_IagB-like | 4.68e-49 | 43 | 147 | 2 | 107 | Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda. |
| PRK15328 | PRK15328 | 3.47e-23 | 33 | 143 | 20 | 135 | type III secretion system invasion protein IagB. |
| PRK13722 | PRK13722 | 1.17e-19 | 33 | 146 | 21 | 141 | lytic transglycosylase; Provisional |
| pfam01464 | SLT | 1.92e-10 | 35 | 138 | 1 | 102 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
| PRK13888 | PRK13888 | 3.96e-10 | 66 | 152 | 48 | 136 | conjugal transfer protein TrbN; Provisional |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QQK36387.1 | 9.79e-112 | 1 | 157 | 1 | 157 |
| ANJ73749.1 | 3.93e-88 | 1 | 153 | 1 | 152 |
| ANH71780.1 | 1.91e-86 | 9 | 151 | 9 | 150 |
| CBJ36726.1 | 4.40e-86 | 5 | 154 | 19 | 167 |
| QOK90548.1 | 6.25e-86 | 5 | 154 | 19 | 167 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4XP8_A | 1.06e-13 | 33 | 111 | 2 | 82 | Structureof EtgA D60N mutant [Escherichia coli] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P17738 | 7.60e-20 | 33 | 146 | 21 | 141 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| Q00739 | 7.60e-20 | 33 | 146 | 21 | 141 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| P14499 | 2.12e-19 | 31 | 146 | 19 | 141 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| P47737 | 2.99e-19 | 33 | 146 | 21 | 141 | X polypeptide OS=Escherichia coli (strain K12) OX=83333 GN=yubQ PE=3 SV=1 |
| E1WAC2 | 4.09e-17 | 28 | 154 | 15 | 143 | Invasion protein IagB OS=Salmonella typhimurium (strain SL1344) OX=216597 GN=iagB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000255 | 0.999082 | 0.000174 | 0.000175 | 0.000145 | 0.000143 |