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CAZyme Information: MGYG000001384_04835
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ralstonia pickettii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii | |||||||||||
| CAZyme ID | MGYG000001384_04835 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 17606; End: 18106 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH23 | 32 | 150 | 2.4e-20 | 0.8666666666666667 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13400 | LT_IagB-like | 1.51e-45 | 32 | 143 | 1 | 108 | Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda. |
| PRK15328 | PRK15328 | 7.11e-31 | 6 | 150 | 3 | 144 | type III secretion system invasion protein IagB. |
| PRK13722 | PRK13722 | 1.24e-25 | 24 | 156 | 22 | 156 | lytic transglycosylase; Provisional |
| pfam01464 | SLT | 6.70e-16 | 25 | 127 | 1 | 100 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
| cd16892 | LT_VirB1-like | 4.15e-10 | 33 | 122 | 8 | 124 | VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| BCZ16639.1 | 5.57e-120 | 1 | 166 | 1 | 166 |
| QPN33272.1 | 5.57e-120 | 1 | 166 | 1 | 166 |
| ART61637.1 | 5.57e-120 | 1 | 166 | 1 | 166 |
| ART57452.1 | 5.57e-120 | 1 | 166 | 1 | 166 |
| ABM44288.1 | 5.57e-120 | 1 | 166 | 1 | 166 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4XP8_A | 1.98e-16 | 24 | 107 | 3 | 87 | Structureof EtgA D60N mutant [Escherichia coli] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q00739 | 8.53e-25 | 24 | 146 | 22 | 146 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| P47737 | 1.20e-24 | 24 | 146 | 22 | 146 | X polypeptide OS=Escherichia coli (strain K12) OX=83333 GN=yubQ PE=3 SV=1 |
| P14499 | 4.77e-24 | 21 | 163 | 19 | 163 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| P17738 | 4.77e-24 | 24 | 146 | 22 | 146 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| E1WAC2 | 1.45e-20 | 22 | 147 | 19 | 141 | Invasion protein IagB OS=Salmonella typhimurium (strain SL1344) OX=216597 GN=iagB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000299 | 0.998982 | 0.000166 | 0.000206 | 0.000181 | 0.000155 |