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CAZyme Information: MGYG000001395_01038

You are here: Home > Sequence: MGYG000001395_01038

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Listeria innocua
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Listeriaceae; Listeria; Listeria innocua
CAZyme ID MGYG000001395_01038
CAZy Family CBM16
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2008 223147.1 4.7188
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001395 2890785 Isolate not provided not provided
Gene Location Start: 202136;  End: 208162  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001395_01038.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3209 RhsA 5.79e-48 954 2001 4 773
Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only].
NF033679 DNRLRE_dom 8.46e-27 295 458 1 164
DNRLRE domain. The DNRLRE domain, with a length of about 160 amino acids, appears typically in large, repetitive surface proteins of bacteria and archaea, sometimes repeated several times. It occurs, notably, three times in the C-terminal region of the enzyme disaggregatase from the archaeal species Methanosarcina mazei, each time with the motif DNRLRE, for which the domain is named. Archaeal proteins within this family are described particularly well by the currently more narrowly defined Pfam model, PF06848. Note that the catalytic region of disaggregatase, in the N-terminal portion of the protein, is modeled by a different HMM, PF08480.
COG3209 RhsA 1.39e-09 861 1108 38 316
Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only].
pfam05593 RHS_repeat 1.22e-05 1794 1824 1 31
RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.
COG3209 RhsA 6.40e-05 867 1129 225 534
Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGF42541.1 0.0 1 2001 1 2001
AUI60804.1 7.49e-25 50 479 45 463
ANN19275.1 8.69e-24 18 479 1 450
QRT48460.1 6.62e-22 1516 1985 1779 2243
AEV81245.1 5.25e-20 64 525 163 618

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q07833 8.19e-312 32 2001 55 2126
tRNA nuclease WapA OS=Bacillus subtilis (strain 168) OX=224308 GN=wapA PE=1 SV=2
G4NYJ6 3.45e-309 25 2001 48 2126
tRNA3(Ser)-specific nuclease WapA OS=Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10) OX=1052585 GN=wapA PE=1 SV=1
D4G3R4 1.66e-299 32 2001 68 2139
tRNA(Glu)-specific nuclease WapA OS=Bacillus subtilis subsp. natto (strain BEST195) OX=645657 GN=wapA PE=1 SV=2
P42018 8.26e-28 40 244 36 245
Wall-associated protein OS=Geobacillus stearothermophilus OX=1422 GN=wapA' PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.010203 0.968473 0.020366 0.000414 0.000260 0.000236

TMHMM  Annotations      download full data without filtering help

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9 31