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CAZyme Information: MGYG000001395_01502

You are here: Home > Sequence: MGYG000001395_01502

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Listeria innocua
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Listeriaceae; Listeria; Listeria innocua
CAZyme ID MGYG000001395_01502
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
463 49904.28 6.8903
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001395 2890785 Isolate not provided not provided
Gene Location Start: 667365;  End: 668756  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001395_01502.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4932 COG4932 2.70e-85 1 290 635 944
Uncharacterized surface anchored protein [Function unknown].
pfam05737 Collagen_bind 2.51e-31 177 295 1 129
Collagen binding domain. The domain fold is a jelly-roll, composed of two antiparallel beta-sheets and two short alpha-helices. A groove on beta-sheet I exhibited the best surface complementarity to the collagen. This site partially overlaps with the peptide sequence previously shown to be critical for collagen binding. Recombinant proteins containing single amino acid mutations designed to disrupt the surface of the putative binding site exhibited significantly lower affinities for collagen.
pfam17961 Big_8 2.43e-19 49 144 1 100
Bacterial Ig domain. This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.
pfam01476 LysM 7.27e-13 359 401 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
COG1388 LysM 1.22e-12 325 417 33 124
LysM repeat [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGF42130.1 0.0 1 463 1 463
QUR86720.1 0.0 1 463 1 463
CAC96111.1 0.0 1 463 1 463
ALQ20186.1 1.16e-290 1 463 1 462
ALQ15984.1 1.16e-290 1 463 1 462

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2MKX_A 3.61e-06 359 398 7 46
Solutionstructure of LysM the peptidoglycan binding domain of autolysin AtlA from Enterococcus faecalis [Enterococcus faecalis V583]
5CF3_A 6.75e-06 45 141 26 126
Crystalstructures of Bbp from Staphylococcus aureus [Staphylococcus aureus],5CFA_A Crystal structures of Bbp from Staphylococcus aureus with peptide ligand [Staphylococcus aureus],5CFA_B Crystal structures of Bbp from Staphylococcus aureus with peptide ligand [Staphylococcus aureus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8Y8L7 7.06e-286 1 463 1 462
Cell wall protein Lmo0880 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=lmo0880 PE=1 SV=1
P11000 1.62e-15 1 291 3 316
Wall-associated protein OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) OX=210007 GN=wapA PE=3 SV=2
Q9CIT4 6.67e-06 360 398 324 362
Probable N-acetylmuramidase OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=acmA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000266 0.998872 0.000311 0.000189 0.000186 0.000161

TMHMM  Annotations      download full data without filtering help

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