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CAZyme Information: MGYG000001395_02690

You are here: Home > Sequence: MGYG000001395_02690

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Listeria innocua
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Listeriaceae; Listeria; Listeria innocua
CAZyme ID MGYG000001395_02690
CAZy Family GH0
CAZyme Description HTH-type transcriptional activator RhaR
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
780 MGYG000001395_17|CGC6 90613.44 6.3541
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001395 2890785 Isolate not provided not provided
Gene Location Start: 246593;  End: 248935  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001395_02690.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3664 XynB 0.0 344 780 1 428
Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207 AraC 6.70e-29 143 261 1 119
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 7.46e-27 179 261 2 84
helix_turn_helix, arabinose operon control protein.
COG4977 GlxA 1.18e-23 151 263 209 321
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].
pfam12833 HTH_18 2.50e-23 185 261 2 79
Helix-turn-helix domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUR88544.1 0.0 1 780 1 780
QGF42946.1 0.0 1 780 1 780
QQX73871.1 0.0 1 780 1 780
QOF59649.1 0.0 1 780 1 780
QOF64550.1 0.0 1 780 1 780

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3OOU_A 2.91e-10 164 264 7 107
Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua]
3OIO_A 1.57e-09 172 263 17 108
Crystalstructure of transcriptional regulator (AraC-type DNA-binding domain-containing proteins) from Chromobacterium violaceum [Chromobacterium violaceum]
1BL0_A 1.08e-08 155 261 4 110
MultipleAntibiotic Resistance Protein (Mara)DNA COMPLEX [Escherichia coli]
1XS9_A 1.16e-08 155 261 7 113
ChainA, Multiple antibiotic resistance protein marA [Escherichia coli]
7BEF_G 4.53e-07 164 265 25 126
ChainG, Transcriptional activator RamA [Klebsiella pneumoniae],7BEG_G Chain G, Transcriptional activator RamA [Klebsiella pneumoniae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q6GKK1 3.45e-79 5 777 3 740
Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q8NYT6 2.39e-77 5 777 3 740
Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21 2.39e-77 5 777 3 740
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q7A882 1.22e-76 5 777 3 740
Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q99XB1 1.22e-76 5 777 3 740
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000059 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001395_02690.