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CAZyme Information: MGYG000001404_03818

You are here: Home > Sequence: MGYG000001404_03818

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus_L senegalensis
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus_L; Paenibacillus_L senegalensis
CAZyme ID MGYG000001404_03818
CAZy Family PL17
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
823 MGYG000001404_5|CGC2 90670.51 6.553
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001404 5495033 Isolate not provided not provided
Gene Location Start: 279758;  End: 282229  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001404_03818.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL17 454 570 9.3e-28 0.9712230215827338

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07940 Hepar_II_III 6.91e-15 448 538 6 98
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.
pfam05426 Alginate_lyase 5.88e-05 154 303 116 262
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AJY75801.1 1.09e-216 12 807 12 703
AYB43935.1 2.27e-215 1 813 1 741
QNK54421.1 5.71e-213 17 820 16 709
ACX65921.1 2.63e-211 1 813 1 741
AWP30874.1 1.15e-210 10 813 10 765

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7BJT_A 3.23e-07 81 536 78 496
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BJT_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]
7BM6_A 3.79e-06 81 536 78 496
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BM6_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000041 0.000003 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001404_03818.