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CAZyme Information: MGYG000001408_02645
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Brevibacterium senegalense | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Brevibacteriaceae; Brevibacterium; Brevibacterium senegalense | |||||||||||
| CAZyme ID | MGYG000001408_02645 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | Choline oxidase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 150825; End: 152396 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 6 | 329 | 6.1e-98 | 0.6038732394366197 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK02106 | PRK02106 | 1.78e-143 | 2 | 516 | 1 | 531 | choline dehydrogenase; Validated |
| COG2303 | BetA | 5.43e-122 | 6 | 523 | 7 | 540 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| pfam05199 | GMC_oxred_C | 7.12e-44 | 373 | 512 | 2 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
| pfam00732 | GMC_oxred_N | 1.16e-38 | 74 | 302 | 15 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| PLN02785 | PLN02785 | 1.57e-24 | 6 | 509 | 55 | 569 | Protein HOTHEAD |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ATY64015.1 | 8.42e-133 | 6 | 519 | 13 | 533 |
| QLI67559.1 | 3.26e-132 | 5 | 519 | 12 | 532 |
| QUC21054.1 | 1.07e-130 | 5 | 519 | 12 | 533 |
| QPH10566.1 | 1.21e-129 | 5 | 519 | 12 | 533 |
| QGI77692.1 | 3.20e-129 | 5 | 519 | 12 | 533 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2JBV_A | 6.21e-284 | 7 | 521 | 14 | 531 | Crystalstructure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis] |
| 3NNE_A | 1.78e-283 | 7 | 521 | 14 | 531 | Crystalstructure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis] |
| 3LJP_A | 2.52e-283 | 7 | 521 | 14 | 531 | ChainA, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis] |
| 6ZH7_A | 1.16e-65 | 7 | 516 | 8 | 560 | ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 6YS2_AAA | 1.16e-65 | 7 | 516 | 8 | 560 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q7X2H8 | 3.40e-283 | 7 | 521 | 14 | 531 | Choline oxidase OS=Arthrobacter globiformis OX=1665 GN=codA PE=1 SV=1 |
| Q8NE62 | 5.34e-88 | 2 | 521 | 36 | 576 | Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2 |
| Q47944 | 8.12e-88 | 7 | 516 | 5 | 527 | L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1 |
| Q8BJ64 | 1.55e-87 | 5 | 516 | 41 | 573 | Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1 |
| A6U6Y8 | 1.41e-86 | 8 | 516 | 4 | 525 | Oxygen-dependent choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.999908 | 0.000114 | 0.000007 | 0.000000 | 0.000000 | 0.000000 |