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CAZyme Information: MGYG000001417_01611
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Noviherbaspirillum massiliense | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Noviherbaspirillum; Noviherbaspirillum massiliense | |||||||||||
| CAZyme ID | MGYG000001417_01611 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1684801; End: 1685940 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 1 | 355 | 9.3e-126 | 0.9830508474576272 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 3.10e-173 | 1 | 375 | 6 | 378 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 7.42e-134 | 1 | 374 | 6 | 381 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 2.44e-100 | 1 | 368 | 3 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 2.95e-100 | 1 | 371 | 10 | 385 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 1.29e-38 | 3 | 332 | 233 | 566 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AMP06002.1 | 7.66e-215 | 1 | 374 | 12 | 385 |
| AMP10826.1 | 2.32e-213 | 1 | 376 | 12 | 387 |
| AMP00933.1 | 2.32e-213 | 1 | 376 | 12 | 387 |
| AIY42575.1 | 4.67e-213 | 1 | 374 | 12 | 385 |
| AMP15938.1 | 1.94e-212 | 1 | 374 | 12 | 385 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 1.53e-87 | 1 | 371 | 11 | 380 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 2.16e-87 | 1 | 371 | 11 | 380 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B2JIB3 | 7.71e-137 | 1 | 379 | 12 | 389 | Lipid-A-disaccharide synthase OS=Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) OX=391038 GN=lpxB PE=3 SV=1 |
| Q2SWY5 | 8.58e-136 | 1 | 372 | 12 | 382 | Lipid-A-disaccharide synthase OS=Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264) OX=271848 GN=lpxB PE=3 SV=1 |
| A3NWL7 | 6.96e-135 | 1 | 378 | 12 | 388 | Lipid-A-disaccharide synthase OS=Burkholderia pseudomallei (strain 1106a) OX=357348 GN=lpxB PE=3 SV=1 |
| Q62JD7 | 6.96e-135 | 1 | 378 | 12 | 388 | Lipid-A-disaccharide synthase OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=lpxB PE=3 SV=1 |
| A1V555 | 6.96e-135 | 1 | 378 | 12 | 388 | Lipid-A-disaccharide synthase OS=Burkholderia mallei (strain SAVP1) OX=320388 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000084 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |