CAZyme Information: MGYG000001417_03895

Basic Information

• Species: Noviherbaspirillum massiliense
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Noviherbaspirillum; Noviherbaspirillum massiliense
• CAZyme ID: MGYG000001417_03895
• CAZy Family: GH0
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
723	MGYG000001417_2|CGC7	81351.11	4.9387

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001417	4171493	Isolate	not provided	not provided

• Gene Location: Start: 1024261; End: 1026432 Strand: +

Full Sequence      

MVEKVKLGEKWYILATESPADESRRVLKHDKTFALFDRFGDIEAVGLGEEGIYHGDTSFL
SQQELQIEGVRPMFLNSTVKDDNGLFIIELMNPDLHPEGQEPIAKGLLHIFRAKLLWNNA
CYEHLRIVNFGLDTTRTTLSIDFGADFKDIFEVRGFHRERRGEYMQPRIGADELVLGYRG
LDDVVRRTRISFDPAPDRLSDSRAEFQVELAPKGEAHIYLTIGCELGETASKAPTDYFGA
FTQLNESIGREMKSRCKIHTSDPLFNSWIDRSTSDLVMLTTPLKEGPYPYAGVPWYSTTF
GRDGILTAREYLWIDPGLARGVLAFLAANQATSVDPERDAEPGKILHEARTGELADLNEI
PFRHYYGTVDATPLFIGLAGAYYERTGDLAFIRGIWSSIRNALEWIDRFGDRDGDGFVEF
ARYTESGLAQQGWKDSPDSVFHQDGRLADAPIALCEVQGYVYEAKLQAAKLGRLLGEPPA
FADELEEAAARLKRRFNDVFWCEEIGTYAIALDGEKKQCKVRSSNAGHALWTGIATQERA
EQVARQLLGEDFFCGWGIRTIPEKEVRYNPMAYHNGSIWPHDNALIADGMARYGLTGEAM
KVFAGMRDVSLYMDQHRMPELFCGFDKRPDEGPTLYPVACSPQAWAAATVFYLLQACLGL
SFDPEKPQIRFRNPQLPPFLDRVEIRDLAINGATVDLMLQRYPNNVGINVMRKEGRAEVV
AVA

Enzyme Prediction     

No EC number prediction in MGYG000001417_03895.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3408	GDB1	3.34e-133	40	697	31	640	Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism].
pfam14742	GDE_N_bis	8.21e-72	27	221	1	193	N-terminal domain of (some) glycogen debranching enzymes. This domain is found on the N-terminal of some glycogen debranching enzymes and is usually followed by the GDE_C (PF06202) and in this sense it is analogous (but probably not homologous) to the GDE_N (PF12439). Its exact function is unknown
pfam06202	GDE_C	6.23e-15	365	650	79	372	Amylo-alpha-1,6-glucosidase. This family includes human glycogen branching enzyme AGL. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homolog GDB1 that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).
pfam17389	Bac_rhamnosid6H	9.66e-12	381	509	109	222	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam04685	DUF608	5.75e-06	382	624	111	344	Glycosyl-hydrolase family 116, catalytic region. This represents a family of archaeal, bacterial and eukaryotic glycosyl hydrolases, that belong to superfamily GH116. The primary catabolic pathway for glucosylceramide is catalysis by the lysosomal enzyme glucocerebrosidase. In higher eukaryotes, glucosylceramide is the precursor of glycosphingolipids, a complex group of ubiquitous membrane lipids. Mutations in the human protein cause motor-neurone defects in hereditary spastic paraplegia. The catalytic nucleophile, identified in UniProtKB:Q97YG8_SULSO, is a glutamine-335, with the likely acid/base at Asp-442 and the aspartates at Asp-406 and Asp-458 residues also playing a role in the catalysis of glucosides and xylosides that are beta-bound to hydrophobic groups. The family is defined as GH116, which presently includes enzymes with beta-glucosidase, EC:3.2.1.21, beta-xylosidase, EC:3.2.1.37, and glucocerebrosidase EC:3.2.1.45 activity.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QDZ29549.1	0.0	1	723	1	723
QAU33831.1	0.0	1	723	1	729
AKJ31224.1	0.0	1	722	1	735
QPC32400.1	0.0	1	719	1	714
BAL96569.1	1.74e-301	1	719	1	718

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000075	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001417_03895.