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CAZyme Information: MGYG000001420_00713
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Alistipes senegalensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes senegalensis | |||||||||||
| CAZyme ID | MGYG000001420_00713 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 915566; End: 917245 Strand: + | |||||||||||
Full Sequence Download help
| MNLKFVTICA AAILATAADC RARTPQPDSS FGDRPFEMPH VPRPAIPDRT VSIADFGGVG | 60 |
| DGHALNTAAF ADAIDALAAL GGGRVDVPEG VWLTGPIVLK DNIELHVGQN AVIVFSDDKS | 120 |
| LYPLVETTFE GLNTLRCQSP LSARGVRNVA VTGCGVIDGN GDAWRAVKRD KLNPRQWKEL | 180 |
| VQSGGVLSDD GKTWYPSESY RFGATSGADQ NVSTWAATRA DFERMRDFLR PVLVAIHNCE | 240 |
| NVLLEGVTFQ NSPCWNIHPA MCTNLIVNDI TVRCPDYAQN SDGIDIESCR NVVLTGSRFD | 300 |
| VGDDGICIKS GKDKAGRDRG IPCENILVDN CIVFHGHGGF VVGSEMSGGV RNVRVSNCVF | 360 |
| SGTDVGLRFK STRGRGGVVE RIWIEDISMN DILQEPLLFD LFYGGKSASE ALAEGPEAEP | 420 |
| TDLAPKAVDE TTPAFRNIRI RDVRCRGARR AMYFNGLPEM NVEHVTVENT FIYAETGARI | 480 |
| NESSDVVLRN VQIIPERGPA LMLNNVKNLR AEGFVTSEGM ERALVVTGSR NRGIAVASAQ | 540 |
| ITGENADLSG SAARYVVIK | 559 |
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 79 | 492 | 1.6e-82 | 0.9569230769230769 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 4.83e-82 | 40 | 531 | 72 | 529 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 1.21e-23 | 231 | 439 | 85 | 274 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03003 | PLN03003 | 1.20e-18 | 230 | 411 | 137 | 309 | Probable polygalacturonase At3g15720 |
| PLN02218 | PLN02218 | 2.39e-17 | 50 | 410 | 67 | 362 | polygalacturonase ADPG |
| PLN03010 | PLN03010 | 1.24e-16 | 236 | 418 | 162 | 335 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBK63669.1 | 0.0 | 1 | 559 | 1 | 555 |
| QIK53004.1 | 1.55e-206 | 31 | 539 | 30 | 535 |
| QIK58422.1 | 2.36e-203 | 31 | 538 | 30 | 534 |
| QIK58732.1 | 3.02e-203 | 35 | 536 | 35 | 533 |
| QRX64943.1 | 4.40e-203 | 13 | 534 | 16 | 534 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JUR_A | 9.31e-74 | 40 | 481 | 17 | 416 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 5OLP_A | 2.05e-57 | 35 | 491 | 29 | 446 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 2UVE_A | 1.63e-32 | 30 | 513 | 140 | 603 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
| 1BHE_A | 2.73e-17 | 91 | 409 | 51 | 320 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 4MXN_A | 4.15e-14 | 53 | 332 | 24 | 236 | Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7PZL3 | 3.53e-42 | 50 | 499 | 62 | 460 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P15922 | 9.93e-36 | 45 | 513 | 147 | 597 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| P27644 | 3.72e-33 | 238 | 460 | 29 | 248 | Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1 |
| Q8RY29 | 3.92e-19 | 50 | 407 | 67 | 359 | Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2 |
| P48978 | 1.13e-17 | 45 | 403 | 93 | 383 | Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000534 | 0.567265 | 0.431512 | 0.000253 | 0.000235 | 0.000192 |