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CAZyme Information: MGYG000001423_01673

You are here: Home > Sequence: MGYG000001423_01673

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium celatum
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium celatum
CAZyme ID MGYG000001423_01673
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1782 198536.15 4.14
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001423 3553421 Isolate not provided not provided
Gene Location Start: 17253;  End: 22601  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001423_01673.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM32 1243 1368 3.9e-21 0.9435483870967742
CBM32 129 260 2.9e-16 0.8548387096774194

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 2.03e-17 1238 1367 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 8.09e-10 1230 1359 5 135
Substituted updates: Jan 31, 2002
cd00057 FA58C 2.42e-08 121 259 9 131
Substituted updates: Jan 31, 2002
pfam00754 F5_F8_type_C 5.41e-07 125 254 1 110
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam07554 FIVAR 0.001 1655 1715 2 69
FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SQG39183.1 0.0 1 1470 1 1460
ABG83191.1 0.0 1 1470 1 1460
AOY54034.1 0.0 1 1470 1 1460
AMN35790.1 0.0 1 1470 1 1460
SQI04569.1 0.0 1 1470 1 1460

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2V72_A 5.68e-09 1226 1367 3 139
Thestructure of the family 32 CBM from C. perfringens NanJ in complex with galactose [Clostridium perfringens]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000317 0.998870 0.000233 0.000202 0.000185 0.000154

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001423_01673.