CAZyme Information: MGYG000001426_01610

Basic Information

• Species: Phytobacter massiliensis
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter; Phytobacter massiliensis
• CAZyme ID: MGYG000001426_01610
• CAZy Family: AA6
• CAZyme Description: NAD(P)H dehydrogenase (quinone)

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
198	MGYG000001426_1|CGC24	20831.48	6.3762

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001426	4922332	Isolate	not provided	not provided

• Gene Location: Start: 1671988; End: 1672584 Strand: +

Full Sequence      

MARVLVLYYSMYGHVETLAHAVAEGAQKVQGAEVVIKRVPETMPPDLFAKAGGKTQNAPV
ATPQELAEYDAIIIGTPTRFGNMSGQMRTFFDQTGGLWASGALYGKVASVFSSTGTGGGQ
EHTISSTWTTLAHHGMVIVPIGYAAQELFDVSQVHGGTPYGATTIAGGDGSRQPSQEELS
IARYQGEYVAGLAVKLHG

Enzyme Prediction     

No EC number prediction in MGYG000001426_01610.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA6	3	194	3.5e-83	0.9897435897435898

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK03767	PRK03767	5.33e-130	1	198	1	200	NAD(P)H:quinone oxidoreductase; Provisional
TIGR01755	flav_wrbA	2.34e-113	2	196	1	197	NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR (SP:P03032) are not detected. [Energy metabolism, Electron transport]
COG0655	WrbA	8.15e-59	1	198	3	207	Multimeric flavodoxin WrbA [Energy production and conversion].
pfam03358	FMN_red	2.54e-13	16	145	17	145	NADPH-dependent FMN reductase.
COG0426	NorV	3.57e-12	2	126	247	351	Flavorubredoxin [Energy production and conversion].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BAS94766.1	2.84e-65	3	198	4	201
CDM84515.1	1.24e-63	3	198	4	201
CAG1846839.1	1.43e-62	1	198	2	201
CCA36908.1	3.83e-62	3	187	4	190
AOA60972.1	3.83e-62	3	187	4	190

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2R96_A	4.72e-129	1	198	1	198	Crystalstructure of E. coli WrbA in complex with FMN [Escherichia coli],2R96_C Crystal structure of E. coli WrbA in complex with FMN [Escherichia coli],2R97_A Crystal structure of E. coli WrbA in complex with FMN [Escherichia coli],2R97_C Crystal structure of E. coli WrbA in complex with FMN [Escherichia coli],2RG1_A Crystal structure of E. coli WrbA apoprotein [Escherichia coli],2RG1_B Crystal structure of E. coli WrbA apoprotein [Escherichia coli],3B6I_A WrbA from Escherichia coli, native structure [Escherichia coli K-12],3B6I_B WrbA from Escherichia coli, native structure [Escherichia coli K-12],3B6J_A WrbA from Escherichia coli, NADH complex [Escherichia coli K-12],3B6J_B WrbA from Escherichia coli, NADH complex [Escherichia coli K-12],3B6K_A WrbA from Escherichia coli, Benzoquinone complex [Escherichia coli K-12],3B6K_B WrbA from Escherichia coli, Benzoquinone complex [Escherichia coli K-12],3B6M_A WrbA from Escherichia coli, second crystal form [Escherichia coli K-12],3B6M_B WrbA from Escherichia coli, second crystal form [Escherichia coli K-12]
4DY4_A	2.63e-128	2	198	1	197	Highresolution structure of E.coli WrbA with FMN [Escherichia coli APEC O1],4DY4_C High resolution structure of E.coli WrbA with FMN [Escherichia coli APEC O1]
3ZHO_A	2.16e-127	2	198	1	197	X-raystructure of E.coli Wrba in complex with FMN at 1.2 A resolution [Escherichia coli],3ZHO_B X-ray structure of E.coli Wrba in complex with FMN at 1.2 A resolution [Escherichia coli],4YQE_A Crystal structure of E. coli WrbA in complex with benzoquinone [Escherichia coli K-12],4YQE_B Crystal structure of E. coli WrbA in complex with benzoquinone [Escherichia coli K-12],5F12_A WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE) [Escherichia coli K-12],5F12_B WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE) [Escherichia coli K-12]
4LA4_A	7.21e-70	3	196	4	203	Crystalstructure of native PnpB [Pseudomonas sp. WBC-3],4LA4_B Crystal structure of native PnpB [Pseudomonas sp. WBC-3],4LAF_A Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3],4LAF_B Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3],4LAF_C Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3],4LAF_D Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3]
5F4B_A	1.34e-66	1	198	4	202	Structureof B. abortus WrbA-related protein A (WrpA) [Brucella abortus 2308],5F4B_B Structure of B. abortus WrbA-related protein A (WrpA) [Brucella abortus 2308]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
B4TEP2	1.33e-130	1	198	1	198	NAD(P)H dehydrogenase (quinone) OS=Salmonella heidelberg (strain SL476) OX=454169 GN=SeHA_C1229 PE=3 SV=1
B5F202	1.33e-130	1	198	1	198	NAD(P)H dehydrogenase (quinone) OS=Salmonella agona (strain SL483) OX=454166 GN=SeAg_B1078 PE=3 SV=1
B4T2V2	1.33e-130	1	198	1	198	NAD(P)H dehydrogenase (quinone) OS=Salmonella newport (strain SL254) OX=423368 GN=SNSL254_A1214 PE=3 SV=1
B5FR47	1.33e-130	1	198	1	198	NAD(P)H dehydrogenase (quinone) OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=SeD_A1194 PE=3 SV=1
B4TSN0	1.33e-130	1	198	1	198	NAD(P)H dehydrogenase (quinone) OS=Salmonella schwarzengrund (strain CVM19633) OX=439843 GN=SeSA_A1183 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000087	0.000001	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001426_01610.