CAZyme Information: MGYG000001432_00647

Basic Information

• Species: Helicobacter_C cinaedi
• Lineage: Bacteria; Campylobacterota; Campylobacteria; Campylobacterales; Helicobacteraceae; Helicobacter_C; Helicobacter_C cinaedi
• CAZyme ID: MGYG000001432_00647
• CAZy Family: GT9
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
393		45443.38	9.6126

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001432	2240130	Isolate	not provided	not provided

• Gene Location: Start: 629166; End: 630347 Strand: -

Full Sequence      

MLKSILRSILVPVMDICVNILAYTKPKFHRQKSIVILRTDAIGDYLLFRAFLREARAAYP
TYHITLIGNSAWRSLYEYFDSAYCDECVWISTADFQARHIFYKIKVLRHIKQVGYELLIN
PQHSRDKLNAPFAQHINALSKIAPQGDDVNLSPRKKARHDRIYSTLTPSSPEILFEFYRN
KEFFEQLLQKPLNTSPKLHLLSPTPPHYKQPYSILFVGASAKYRRWSVKHFAEVGEHLMR
VYKHNLLVCGGNADIESGFYLEQLLQAKVKDYKQSIYNLTGKTTLAELVSLVYNGNLLVS
NETSTVHLAALLDTTIIIVVSNGNHLGRFIPYPKEIRDKYYPVFHPYITANYARYKELSN
AFAYKSTLNINDIQPKQVIDVIDQIYTQRSDNE

Enzyme Prediction     

No EC number prediction in MGYG000001432_00647.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT9	105	334	7.8e-27	0.8577777777777778

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd03789	GT9_LPS_heptosyltransferase	3.76e-30	33	384	1	277	lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
COG0859	RfaF	4.99e-28	32	388	2	332	ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
pfam01075	Glyco_transf_9	4.30e-12	179	332	67	220	Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
TIGR02195	heptsyl_trn_II	1.13e-07	188	319	158	276	lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK10916	PRK10916	1.58e-05	224	313	195	280	ADP-heptose--LPS heptosyltransferase RfaF.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BAM31893.1	9.59e-289	1	393	1	393
QOQ89978.1	1.31e-286	1	393	1	393
CUU39684.1	2.81e-126	3	393	13	396
ACM93569.1	1.38e-91	30	385	28	378
VEJ24445.1	1.20e-78	30	391	25	380

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.999993	0.000023	0.000004	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001432_00647.