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CAZyme Information: MGYG000001442_00460
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Streptococcus sp000411475 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sp000411475 | |||||||||||
| CAZyme ID | MGYG000001442_00460 | |||||||||||
| CAZy Family | GH73 | |||||||||||
| CAZyme Description | Putative endo-beta-N-acetylglucosaminidase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 458465; End: 460534 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG4193 | LytD | 5.03e-46 | 521 | 689 | 58 | 236 | Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]. |
| pfam18342 | LytB_WW | 2.91e-31 | 419 | 482 | 3 | 66 | Endo-beta-N-acetylglucosaminidase LytB WW domain. This domain has can be found in endo-beta-N-acetylglucosaminidase LytB (EC 3.2.1.96) of S. pneumoniae and other gram positive bacteria. Comparative analysis revealed that the second all-beta module derived from the WW-like segments is structurally similar to the chitin binding domain of S. marcescens chitinase ChiB, implying a peptide binding function for this module. |
| NF033930 | pneumo_PspA | 2.41e-30 | 45 | 356 | 393 | 645 | pneumococcal surface protein A. The pneumococcal surface protein proteins, found in Streptococcus pneumoniae, are repetitive, with patterns of localized high sequence identity across pairs of proteins given different specific names that recombination may be presumed. This protein, PspA, has an N-terminal region that lacks a cross-wall-targeting YSIRK type extended signal peptide, in contrast to the closely related choline-binding protein CbpA which has a similar C-terminus but a YSIRK-containing region at the N-terminus. |
| NF033838 | PspC_subgroup_1 | 1.76e-27 | 24 | 295 | 417 | 668 | pneumococcal surface protein PspC, choline-binding form. The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. |
| pfam17890 | WW_like | 3.08e-27 | 483 | 535 | 1 | 53 | Peptidoglycan hydrolase LytB WW-like domain. Structural analysis revealed that the catalytic domain of LytB consists of three structurally independent modules: SH3b, WW domain-like, and the glycoside hydrolase family 73 (GH73). This entry is the WW like domain found in endo-beta-N-acetylglucosaminidase LytB from Streptococcus pneumoniae. Functional analysis show that the deletion of both SH3b and WW modules almost completely abolished the activity of LytB. Furthermore, it was shown that the SH3b and WW modules are indispensable for LytB in cell separation. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QLF55526.1 | 8.13e-284 | 1 | 689 | 1 | 635 |
| AMD97043.1 | 7.51e-249 | 1 | 689 | 1 | 670 |
| VTS71620.1 | 3.35e-215 | 1 | 689 | 1 | 674 |
| BBA08754.1 | 9.16e-194 | 1 | 689 | 1 | 622 |
| QCZ57527.1 | 2.96e-192 | 1 | 689 | 1 | 622 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4Q2W_A | 6.01e-121 | 411 | 689 | 11 | 290 | CrystalStructure of pneumococcal peptidoglycan hydrolase LytB [Streptococcus pneumoniae TIGR4] |
| 4PI7_A | 3.86e-19 | 534 | 688 | 51 | 218 | ChainA, Autolysin E [Staphylococcus aureus subsp. aureus Mu50],4PI9_A Chain A, Autolysin E [Staphylococcus aureus subsp. aureus Mu50],4PIA_A Chain A, Autolysin E [Staphylococcus aureus subsp. aureus Mu50] |
| 4PI8_A | 2.40e-18 | 534 | 688 | 51 | 218 | ChainA, Autolysin E [Staphylococcus aureus subsp. aureus Mu50] |
| 6FXO_A | 9.59e-14 | 542 | 687 | 67 | 233 | ChainA, Bifunctional autolysin [Staphylococcus aureus subsp. aureus Mu50] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P59205 | 1.09e-120 | 405 | 689 | 368 | 658 | Putative endo-beta-N-acetylglucosaminidase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=lytB PE=1 SV=1 |
| P59206 | 3.64e-120 | 405 | 689 | 412 | 702 | Putative endo-beta-N-acetylglucosaminidase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=lytB PE=1 SV=1 |
| Q5HH31 | 4.23e-12 | 525 | 687 | 1051 | 1245 | Bifunctional autolysin OS=Staphylococcus aureus (strain COL) OX=93062 GN=atl PE=3 SV=1 |
| Q99V41 | 7.30e-12 | 542 | 687 | 1071 | 1237 | Bifunctional autolysin OS=Staphylococcus aureus (strain N315) OX=158879 GN=atl PE=1 SV=1 |
| Q931U5 | 7.30e-12 | 542 | 687 | 1071 | 1237 | Bifunctional autolysin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=atl PE=1 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000267 | 0.998790 | 0.000409 | 0.000188 | 0.000176 | 0.000142 |