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CAZyme Information: MGYG000001458_00433
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Cetobacterium_A somerae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Cetobacterium_A; Cetobacterium_A somerae | |||||||||||
| CAZyme ID | MGYG000001458_00433 | |||||||||||
| CAZy Family | PL2 | |||||||||||
| CAZyme Description | Pectate disaccharide-lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 12368; End: 14047 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL2 | 31 | 554 | 7e-212 | 0.9812734082397003 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam06917 | Pectate_lyase_2 | 1.61e-147 | 30 | 547 | 12 | 523 | Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AVQ19793.1 | 2.56e-284 | 1 | 558 | 5 | 562 |
| AIL73345.1 | 1.55e-208 | 5 | 557 | 3 | 557 |
| QMV39062.1 | 1.55e-208 | 5 | 557 | 3 | 557 |
| ALM73723.1 | 1.55e-208 | 5 | 557 | 3 | 557 |
| ANH66085.1 | 1.55e-208 | 5 | 557 | 3 | 557 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5A29_A | 1.50e-208 | 22 | 557 | 24 | 561 | Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016] |
| 6OJL_A | 7.21e-141 | 27 | 553 | 25 | 545 | Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica] |
| 2V8J_A | 1.27e-140 | 30 | 553 | 1 | 518 | Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica] |
| 2V8I_A | 1.64e-140 | 30 | 553 | 2 | 519 | Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica] |
| 6OJK_A | 4.07e-140 | 27 | 553 | 25 | 545 | Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q05526 | 2.86e-152 | 7 | 557 | 1 | 532 | Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3 |
| P14005 | 1.23e-140 | 3 | 547 | 2 | 535 | Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1 |
| P11278 | 1.98e-140 | 6 | 553 | 3 | 545 | Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000227 | 0.999159 | 0.000153 | 0.000159 | 0.000150 | 0.000135 |