CAZyme Information: MGYG000001460_03188

Basic Information

• Species: Romboutsia dakarensis
• Lineage: Bacteria; Firmicutes_A; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Romboutsia; Romboutsia dakarensis
• CAZyme ID: MGYG000001460_03188
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
516		58408.74	4.348

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001460	3735762	Isolate	not provided	not provided

• Gene Location: Start: 3; End: 1553 Strand: -

Full Sequence      

MELIKDVIKVDNRIDFGKYQTFIEAEAVVPDKKSDVYEILKTEGYICIKKTEVTDGKILC
RGSFNYNVMYITDDKNTVSSMDGRIDINEVIEKDNVVQDMEYMLFPEVEHVDCTILNERK
IRVGALMNIRGSLFDKQRLDIVKDVSQVEGIQKHRKEINYQDIIGIEKSESVIRDTVTIN
TEEIQSIISLSPMARIKESRVTDNKVIVGGVLEINPLACTYDGEIVELDKIGIDFTQFIE
VPGACEGMTEESLLSMGDLNYIFKQNSESNTGILDLDCTVYCKVKVTDEVSREVLQDAYS
PQKIIKFDQRTMELNKALSSGTETFVVRESIKNSNDDMQIKDIVSVCPSISIENTYIEDN
NSVVQGIIKVDVLYVPVEGLKSVYRISEEIPFEHEVTIDNLTDTCKVFSTVCIEKVDVDL
NRDQIDLNVKVKRFTEAIDKKSESFIIKGDDLGVYDLSTAPSIIVYICKEGDNLWNVAKK
YNTTESEIAELNELKIEEPLKAGKCLILEKKVVLAD

Enzyme Prediction     

No EC number prediction in MGYG000001460_03188.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam12673	DUF3794	1.89e-13	35	116	1	80	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
pfam12673	DUF3794	2.22e-09	339	420	1	79	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
cd00118	LysM	5.43e-07	464	508	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam12673	DUF3794	1.28e-05	183	261	1	77	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
pfam01476	LysM	1.89e-05	466	495	1	30	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
CED94964.1	0.0	1	516	1	516
CEI74237.1	0.0	1	516	1	516
QJA09738.1	1.70e-310	1	516	1	516
AVB58807.1	6.29e-306	1	516	1	516
QQY49350.1	6.29e-306	1	516	1	516

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000065	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001460_03188.