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CAZyme Information: MGYG000001461_01918
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Bacteroides neonati | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides neonati | |||||||||||
| CAZyme ID | MGYG000001461_01918 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Integration host factor subunit alpha | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 34445; End: 35725 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00216 | Bac_DNA_binding | 1.29e-16 | 8 | 93 | 3 | 88 | Bacterial DNA-binding protein. |
| cd13835 | IHF_A | 1.22e-12 | 8 | 93 | 3 | 88 | Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms. |
| smart00411 | BHL | 1.01e-11 | 8 | 94 | 4 | 90 | bacterial (prokaryotic) histone like domain. |
| cd13831 | HU | 3.32e-11 | 8 | 91 | 3 | 86 | histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site. |
| COG0776 | HimA | 3.64e-11 | 8 | 96 | 5 | 93 | Bacterial nucleoid DNA-binding protein [Replication, recombination and repair]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QCQ46347.1 | 1.71e-105 | 1 | 426 | 1 | 467 |
| QLK83727.1 | 1.71e-105 | 1 | 426 | 1 | 467 |
| QCQ33042.1 | 1.71e-105 | 1 | 426 | 1 | 467 |
| QUT76217.1 | 3.17e-105 | 1 | 426 | 1 | 476 |
| AUI46656.1 | 9.66e-105 | 1 | 426 | 1 | 467 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5LVT_A | 5.44e-06 | 8 | 93 | 5 | 90 | Structureof HU protein from Lactococcus lactis [Lactococcus lactis subsp. lactis Il1403],5LVT_B Structure of HU protein from Lactococcus lactis [Lactococcus lactis subsp. lactis Il1403],5LVT_C Structure of HU protein from Lactococcus lactis [Lactococcus lactis subsp. lactis Il1403],5LVT_D Structure of HU protein from Lactococcus lactis [Lactococcus lactis subsp. lactis Il1403] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q65TL4 | 3.03e-09 | 9 | 95 | 7 | 93 | Integration host factor subunit alpha OS=Mannheimia succiniciproducens (strain MBEL55E) OX=221988 GN=ihfA PE=3 SV=1 |
| Q9CN18 | 7.72e-09 | 9 | 95 | 7 | 93 | Integration host factor subunit alpha OS=Pasteurella multocida (strain Pm70) OX=272843 GN=ihfA PE=3 SV=1 |
| B2FN73 | 1.48e-08 | 9 | 93 | 7 | 91 | Integration host factor subunit alpha OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=ihfA PE=3 SV=1 |
| Q9PFD5 | 3.76e-08 | 9 | 94 | 7 | 92 | Integration host factor subunit alpha OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=ihfA PE=3 SV=1 |
| B2I9P2 | 1.31e-07 | 9 | 94 | 7 | 92 | Integration host factor subunit alpha OS=Xylella fastidiosa (strain M23) OX=405441 GN=ihfA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000063 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
