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CAZyme Information: MGYG000001464_02408

You are here: Home > Sequence: MGYG000001464_02408

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Fusobacterium polymorphum
Lineage Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium polymorphum
CAZyme ID MGYG000001464_02408
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2036 MGYG000001464_6|CGC3 236521.47 5.5957
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001464 2566364 Isolate not provided not provided
Gene Location Start: 812644;  End: 818754  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001464_02408.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 5.43e-54 737 1277 2 540
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG4646 COG4646 4.20e-27 1420 1607 441 635
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
smart00490 HELICc 6.02e-09 1659 1745 1 82
helicase superfamily c-terminal domain.
smart00487 DEXDc 2.27e-08 1221 1324 7 110
DEAD-like helicases superfamily.
cd18011 DEXDc_RapA 6.56e-07 1223 1281 1 61
DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QIW86704.1 8.08e-287 474 1967 1652 3212
QIW86628.1 8.08e-287 474 1967 1652 3212
ASV45029.1 4.85e-285 474 1967 1584 3144
AXF51455.1 1.01e-271 474 1923 1818 3336
AEY69616.1 6.69e-270 474 1923 1725 3243

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 1.49e-32 526 1783 87 1555
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000041 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001464_02408.