CAZyme Information: MGYG000001474_01869

Basic Information

• Species: Clostridium_J sp000821305
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_J; Clostridium_J sp000821305
• CAZyme ID: MGYG000001474_01869
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
520	MGYG000001474_15|CGC4	58661.39	4.4304

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001474	4325182	Isolate	not provided	not provided

• Gene Location: Start: 451120; End: 452682 Strand: -

Full Sequence      

MDLDLIKDYIEYEQSIAQNDAKIFVKEEYVIPDTLPDVESILMLDVKPMITNKEVGTDKV
NLEGQLQYTILYMAKDSGATEAHSVTYNGNMAESINMVGAQANMYCDVELNIEHMDCVII
NERKISIQGFMVCRCNGYNINSFEIVKDVHEGKDIQFLKKPMTVDKVMEPIEAELVGKAE
MKIDMEKNECLKVVKYNVLIGKKDVRIHDGGLKIEAMATVSILYKGKNGRELFCISDNVP
LYKEVTVDELKPNMEYFTDFCLNSFEYDVRQDDMGESRIIDVEFIVKATTNVMYKEEVEV
IQDGYSPTKHLDMETKENNINVIQGHGYNECIVKGDIETKNDDLKPVKVIMTTGAVTISD
KYVKNDKVEVEGVLKVCVIYASEDDEHYLVNMEDEIPFSAKVDIAGTNPNMQAVASVALE
SIEGSLEGGNINIRAVVRVHCKVFYTIKNKFVVSMSVNDGEVPKKKASIIIYVVQPEDTL
WGIAKKYLTTIEEIIGLNDLYDDEDIKPSQKLIIPGRAIV

Enzyme Prediction     

No EC number prediction in MGYG000001474_01869.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam01476	LysM	1.50e-11	472	515	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd00118	LysM	2.29e-11	470	514	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam12673	DUF3794	2.85e-11	348	423	4	76	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
pfam12673	DUF3794	1.75e-10	37	120	1	80	Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
smart00257	LysM	4.03e-09	471	514	1	44	Lysin motif.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ARC86844.1	4.65e-196	1	520	1	520
APC38753.1	3.02e-174	1	520	1	520
QAT38951.1	2.68e-162	1	520	1	520
AWZ49334.1	4.06e-156	3	520	1	519
SNV64292.1	6.23e-153	1	520	1	520

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000049	0.000002	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001474_01869.