CAZyme Information: MGYG000001477_00237

Basic Information

• Species: Clostridium_L amazonitimonense
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_L; Clostridium_L amazonitimonense
• CAZyme ID: MGYG000001477_00237
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
695	MGYG000001477_4|CGC4	82861.72	4.5596

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001477	3750216	Isolate	not provided	not provided

• Gene Location: Start: 226100; End: 228187 Strand: +

Full Sequence      

MRKEYINYLQEVPINVSLLNIEGYPLHWHDSIEILYVLEGKIKVTIETEIYEVESGELEI
INCDEAHSYENIDGENKVLMFQIDPNFFEKYFNDIRSVFFYTNSSEEGAQEEEKYHILRR
YLSIILCELIQKGDKYEDYIEDTLVELLYHLINDFHQLIYEKEDLKENEEQFERYDRIVR
YIYNNYKDKISLQDIAKKEYLSSYYLSHEIKNTVGYGFKDFLNLTRVEESVKLLLDSDKT
VSEISEELGFSHIRYFNKHFKKHYMCTPLQYRKKYKVDDDTLEKMKKTQELDVKEALEYI
LLYLEDYDRFNYEDRIFKINIDASAEGEEFEEEFNDFINLGDARDLLKEKQRTFITAIQN
DMEFKYALIDKVFSEEMGVAIGHSEFYNWQEVRRVIAFLLSINLRPFIILEKSMFSSEGF
DALKSFIKFFRELYGDYEIGKWRIQLSNIEELEGLDQLEYIRELKELLEYHFELVNVKID
VTNRDAIYDTSYMIPYIIENTTKGNGFYFKAFDQTDFSEDLNNELFMGDNGIITQNGIRK
PSYYAYYLLSKLGNVMIEKGEGYIVTKSGDDIQILLYTYNEDIDKIISFHDILKRRGSKN
IAERNFSLNIINLIDDYTVTKYEINETTGSIYNYWINFGRPSRINDEELELLRKASFPSI
SFSFAKKSSVFNIVTKVKGYGAILFELKRVQKYNY

Enzyme Prediction     

No EC number prediction in MGYG000001477_00237.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	481	643	4.5e-20	0.3642691415313225

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG2207	AraC	1.18e-23	166	276	13	123	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	4.32e-22	189	272	1	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	2.68e-19	195	274	1	81	Helix-turn-helix domain.
COG4753	YesN	1.71e-14	100	276	280	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG3664	XynB	5.34e-10	458	660	191	396	Beta-xylosidase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AKJ90741.1	4.66e-261	1	690	1	688
AJD31664.1	4.66e-261	1	690	1	688
APH14245.1	4.66e-261	1	690	1	688
AKC63577.1	4.66e-261	1	690	1	688
AXG93628.1	9.36e-261	1	690	1	688

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3LSG_A	1.37e-11	178	272	7	102	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]
6SWI_A	5.81e-09	177	273	9	106	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
4M29_A	3.26e-06	482	653	286	461	Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15]
4EKJ_A	4.30e-06	482	653	286	461	ChainA, Beta-xylosidase [Caulobacter vibrioides]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q5HJR8	1.91e-18	30	689	21	741	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q99XB1	4.38e-18	36	689	27	741	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q7A882	4.38e-18	36	689	27	741	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q8NYT6	1.76e-17	36	689	27	741	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GKK1	1.76e-17	36	689	27	741	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000059	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001477_00237.