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CAZyme Information: MGYG000001477_01019

You are here: Home > Sequence: MGYG000001477_01019

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium_L amazonitimonense
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_L; Clostridium_L amazonitimonense
CAZyme ID MGYG000001477_01019
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
522 59496.44 4.4318
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001477 3750216 Isolate not provided not provided
Gene Location Start: 210866;  End: 212434  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001477_01019.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 5.44e-15 472 516 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam12673 DUF3794 1.42e-13 350 428 4 79
Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.
smart00257 LysM 7.00e-13 473 516 1 44
Lysin motif.
pfam01476 LysM 7.44e-13 474 517 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
pfam12673 DUF3794 4.89e-11 38 121 1 79
Domain of unknown function (DUF3794). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length. The family is found in association with pfam01476.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
APF27578.1 1.63e-199 3 522 2 520
AZV55281.1 4.19e-199 4 522 3 517
AVQ43183.1 1.88e-198 3 522 2 520
AVQ37629.1 1.88e-198 3 522 2 520
APH13277.1 1.88e-198 3 522 2 520

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O32062 7.25e-06 473 521 3 52
SpoIVD-associated factor A OS=Bacillus subtilis (strain 168) OX=224308 GN=safA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000049 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001477_01019.