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CAZyme Information: MGYG000001481_01156

You are here: Home > Sequence: MGYG000001481_01156

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Neobacillus sp000821085
Lineage Bacteria; Firmicutes; Bacilli; Bacillales_B; DSM-18226; Neobacillus; Neobacillus sp000821085
CAZyme ID MGYG000001481_01156
CAZy Family GH39
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
779 MGYG000001481_1|CGC9 90659.5 5.9027
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001481 4702581 Isolate not provided not provided
Gene Location Start: 1108922;  End: 1111261  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001481_01156.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 335 726 4.9e-18 0.9559164733178654

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3664 XynB 5.71e-84 343 778 1 428
Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207 AraC 1.74e-26 144 265 1 122
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 4.34e-25 179 262 1 84
helix_turn_helix, arabinose operon control protein.
COG4977 GlxA 3.94e-21 156 262 213 319
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].
pfam12833 HTH_18 1.28e-20 185 264 1 81
Helix-turn-helix domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QHS24385.1 2.66e-290 22 778 1 759
QOF64550.1 1.37e-241 3 778 2 780
QOF56795.1 1.37e-241 3 778 2 780
QOF62367.1 2.52e-239 4 778 3 780
QGF42946.1 7.15e-239 3 778 2 780

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SWI_A 6.27e-11 171 272 13 115
TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
7BEF_G 5.97e-09 149 266 9 127
ChainG, Transcriptional activator RamA [Klebsiella pneumoniae],7BEG_G Chain G, Transcriptional activator RamA [Klebsiella pneumoniae]
3LSG_A 7.87e-09 160 263 1 103
Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]
1BL0_A 1.08e-08 165 262 13 110
MultipleAntibiotic Resistance Protein (Mara)DNA COMPLEX [Escherichia coli]
1XS9_A 1.16e-08 165 262 16 113
ChainA, Multiple antibiotic resistance protein marA [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q6GKK1 2.17e-95 7 776 4 741
Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q936F1 2.22e-94 7 776 4 741
Uncharacterized HTH-type transcriptional regulator OS=Staphylococcus aureus OX=1280 PE=4 SV=2
Q8NYT6 2.22e-94 7 776 4 741
Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21 2.22e-94 7 776 4 741
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q5HJR8 6.03e-94 7 776 4 741
Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000041 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001481_01156.